Riedel Brandalyn C, Daianu Madelaine, Ver Steeg Greg, Mezher Adam, Salminen Lauren E, Galstyan Aram, Thompson Paul M
Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, University of Southern California, Marina del Rey, CA, United States.
USC Information Sciences Institute, Marina del Rey, CA, United States.
Front Aging Neurosci. 2018 Nov 29;10:390. doi: 10.3389/fnagi.2018.00390. eCollection 2018.
Brain aging is a multifaceted process that remains poorly understood. Despite significant advances in technology, progress toward identifying reliable risk factors for suboptimal brain health requires realistically complex analytic methods to explain relationships between genetics, biology, and environment. Here we show the utility of a novel unsupervised machine learning technique - Correlation Explanation (CorEx) - to discover how individual measures from structural brain imaging, genetics, plasma, and CSF markers can jointly provide information on risk for Alzheimer's disease (AD). We examined 829 participants ( : 75.3 ± 6.9 years; 350 women and 479 men) from the Alzheimer's Disease Neuroimaging Initiative database to identify multivariate predictors of cognitive decline and brain atrophy over a 1-year period. Our sample included 231 cognitively normal individuals, 397 with mild cognitive impairment (MCI), and 201 with AD as their baseline diagnosis. Analyses revealed latent factors based on data-driven combinations of plasma markers and brain metrics, that were aligned with established biological pathways in AD. These factors were able to improve disease prediction along the trajectory from normal cognition and MCI to AD, with an area under the receiver operating curve of up to 99%, and prediction accuracy of up to 89.9% on independent "held out" testing data. Further, the most important latent factors that predicted AD consisted of a novel set of variables that are essential for cardiovascular, immune, and bioenergetic functions. Collectively, these results demonstrate the strength of unsupervised network measures in the detection and prediction of AD.
大脑衰老过程是多方面的,目前仍知之甚少。尽管技术取得了重大进展,但要确定大脑健康欠佳的可靠风险因素,还需要切实复杂的分析方法来解释遗传学、生物学和环境之间的关系。在此,我们展示了一种新型无监督机器学习技术——相关性解释(CorEx)的效用,以发现来自结构脑成像、遗传学、血浆和脑脊液标志物的个体测量如何共同提供有关阿尔茨海默病(AD)风险的信息。我们研究了来自阿尔茨海默病神经影像倡议数据库的829名参与者(年龄:75.3±6.9岁;350名女性和479名男性),以确定1年内认知衰退和脑萎缩的多变量预测因素。我们的样本包括231名认知正常个体、397名轻度认知障碍(MCI)患者和201名以AD为基线诊断的患者。分析揭示了基于血浆标志物和脑指标数据驱动组合的潜在因素,这些因素与AD中已确立的生物学途径一致。这些因素能够改善从正常认知、MCI到AD的疾病预测,在独立的“留出”测试数据上,受试者操作特征曲线下面积高达99%,预测准确率高达89.9%。此外,预测AD的最重要潜在因素由一组对心血管、免疫和生物能量功能至关重要的新变量组成。总体而言,这些结果证明了无监督网络测量在AD检测和预测中的优势。