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一种新型发酵细菌(属名 nov.,种名 sp. nov.)与硫还原剂的共培养以增强硫化物生成

Co-culture of a Novel Fermentative Bacterium, gen. nov. sp. nov., With the Sulfur Reducer for Enhanced Sulfidogenesis.

作者信息

Sánchez-Andrea Irene, Florentino Anna Patrícya, Semerel Jeltzlin, Strepis Nikolaos, Sousa Diana Z, Stams Alfons J M

机构信息

Laboratory of Microbiology, Wageningen University, Wageningen, Netherlands.

Laboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, Netherlands.

出版信息

Front Microbiol. 2018 Dec 13;9:3108. doi: 10.3389/fmicb.2018.03108. eCollection 2018.

Abstract

Biosulfidogenesis can be used to remediate low pH and high metal content waters such as acid mine drainage and recover the present metals. The selection of a cheap electron donor for the process is important for the economic viability. In this work we isolated a novel versatile acidotolerant fermentative bacterium (strain ALE) that is able to use a great variety of substrates including glycerol. Strain ALE is an obligate anaerobe, and cells are motile, rod-shaped, spore-forming, and stain Gram-positive. Growth occurred in a pH range from 3.5 to 7 (optimum 5.5), and temperature range from 25 to 40°C (optimum 37°C). It grows by fermentation of sugars, organic acids and glycerol. It has the ability to use thiosulfate, iron and DMSO as electron acceptors. Its genome is 4.7 Mb with 5122 protein-coding sequences, and a G+C content of 46.9 mol%. Based on 16S rRNA gene sequence analysis, the closest cultured species is (91.4% 16S rRNA gene identity) from the family ( order, class, phylum). Based on the distinctive physiological and phylogenetic characteristics of strain ALE, a new genus and species gen. nov., sp. nov., is proposed. The type strain is ALE (=JCM 19373 = DSM 27520). Strain ALE is an incomplete oxidizer and acetate, among other products, accumulates during glycerol conversion. Strain ALE was used to extend the substrate range for sulfur reduction by constructing co-cultures with the acetate oxidizer and sulfur reducer The co-culture was tested with glycerol as substrate in batch and chemostat experiments. Acetate formed by fermentation of glycerol by strain ALE resulted in sulfur reduction by . The co-culture strategy offers good perspectives to use a wide range of cost-efficient substrates, including glycerol, to produce sulfide by specialized sulfur reducers. The recovery of heavy metals from metalliferous streams may become economically feasible by this approach. The locus tag for the genes encoded in is LUCI_. To avoid repetition of the prefix along the text, the locus tags are represented by the specific identifier.

摘要

生物硫化作用可用于修复低pH值和高金属含量的水体,如酸性矿山排水,并回收其中的金属。为该过程选择廉价的电子供体对其经济可行性至关重要。在本研究中,我们分离出了一种新型的、具有多种功能的耐酸发酵细菌(菌株ALE),它能够利用包括甘油在内的多种底物。菌株ALE是专性厌氧菌,细胞具有运动性,呈杆状,能形成孢子,革兰氏染色呈阳性。其生长的pH范围为3.5至7(最适pH为5.5),温度范围为25至40°C(最适温度为37°C)。它通过发酵糖类、有机酸和甘油进行生长。它能够利用硫代硫酸盐、铁和二甲基亚砜作为电子受体。其基因组大小为4.7 Mb,有5122个蛋白质编码序列,G+C含量为46.9 mol%。基于16S rRNA基因序列分析,与其亲缘关系最近的已培养物种是来自 科( 目、 纲、 门)的 (16S rRNA基因序列相似度为91.4%)。基于菌株ALE独特的生理和系统发育特征,提出了一个新属和新种 属,新种 。模式菌株为ALE(=JCM 19373 = DSM 27520)。菌株ALE是不完全氧化菌,在甘油转化过程中会积累乙酸盐等产物。通过与乙酸盐氧化菌和硫还原菌构建共培养体系,利用菌株ALE扩展了硫还原的底物范围。在分批培养和恒化器实验中,以甘油为底物对该共培养体系进行了测试。菌株ALE发酵甘油产生的乙酸盐导致 进行硫还原。这种共培养策略为利用包括甘油在内的多种经济高效的底物,通过专门的硫还原菌生产硫化物提供了良好的前景。通过这种方法,从含金属的水流中回收重金属在经济上可能变得可行。 中编码基因的基因座标签为LUCI_。为避免在文本中重复前缀,基因座标签由特定标识符表示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d71b/6315149/01908f2f8804/fmicb-09-03108-g001.jpg

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