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使用下一代测序和生物信息学方法推断2型糖尿病角质形成细胞中可能涉及的新基因

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches.

作者信息

Lin En-Shyh, Chang Wei-An, Chen Yang-Yi, Wu Ling-Yu, Chen Yi-Jen, Kuo Po-Lin

机构信息

Department of Beauty Science, National Taichung University of Science and Technology, Taichung 403, Taiwan.

Graduate Institute of Clinical Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 807, Taiwan.

出版信息

J Clin Med. 2019 Jan 10;8(1):73. doi: 10.3390/jcm8010073.

Abstract

Keratinocytes constitute the major cell type of epidermis, which participates in re-epithelialization during wound repair and the immune defense response to pathogens. The aim of the current study was to explore the differentially expressed genes and novel microRNA (miRNA) regulations that are potentially involved in diabetic keratinocytes through next-generation sequencing (NGS) and bioinformatics approaches. A total of 420 differentially expressed genes between normal and diabetic keratinocytes were identified, and systematic bioinformatics analyses indicated that these differentially expressed genes were functionally enriched in interferon-alpha signaling, viral defense response, and immune response. Additionally, the potential miR-340-3p- interaction that has been systematically validated in miRNA prediction databases was proposed to participate in the disrupted skin homeostasis, altering the defense and immune response of diabetic skin. The findings may provide new insights into understanding the pathogenesis of epidermal pathologies in diabetic patients and targeting novel molecules to advance diabetic skin care in clinical practice.

摘要

角质形成细胞是表皮的主要细胞类型,其在伤口修复过程中参与再上皮化以及对病原体的免疫防御反应。本研究的目的是通过下一代测序(NGS)和生物信息学方法,探索可能与糖尿病角质形成细胞相关的差异表达基因和新型微小RNA(miRNA)调控。共鉴定出正常和糖尿病角质形成细胞之间420个差异表达基因,系统的生物信息学分析表明,这些差异表达基因在α-干扰素信号传导、病毒防御反应和免疫反应方面功能富集。此外,在miRNA预测数据库中经过系统验证的潜在miR-340-3p相互作用被认为参与了皮肤稳态破坏,改变了糖尿病皮肤的防御和免疫反应。这些发现可能为理解糖尿病患者表皮病变的发病机制以及在临床实践中靶向新分子推进糖尿病皮肤护理提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1e6/6352191/12ca20e0cbe6/jcm-08-00073-g001.jpg

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