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心律失常性右室心肌病的性别差异的生物信息学分析。

Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy.

机构信息

Department of Cardiology, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310000, P.R. China.

Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310000, P.R. China.

出版信息

Mol Med Rep. 2019 Mar;19(3):2238-2244. doi: 10.3892/mmr.2019.9873. Epub 2019 Jan 17.

Abstract

Arrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited disease that exhibits sex differences on clinical presentation. The present study aimed to investigate the sex differences associated with ARVC by conducting an integrated bioinformatics analysis. The GSE29819 gene expression dataset was downloaded from the Gene Expression Omnibus database. The online analytical tool GEO2R was then used to screen for differentially expressed genes (DEGs), which were subsequently processed using enrichment analysis and protein‑protein interaction (PPI) network construction. Functional annotation of the DEGs was determined using ClueGO. The PPI network was constructed with Search Tool for the Retrieval of Interacting Genes, and was visualized with Cytoscape to identify the modules and hub genes. Compared with the female group, a total of 1,188 DEGs, of which 915 were upregulated and 273 were downregulated, were identified in the male group. The enrichment analysis revealed that in KEGG pathways, the upregulated DEGs were substantially enriched in the 'nicotine addiction' pathways, whereas the downregulated DEGS were mainly enriched in the 'ECM‑receptor interaction' and 'protein digestion and absorption' pathways. The PPI network contained 899 nodes and 1,627 edges, among which four significant modules were identified. In addition, kininogen 1, lysophosphatidic acid receptor 5, formyl peptide receptor (FPR) 2, adenylate cyclase 2, γ‑aminobutyric acid type B receptor subunit 2, FPR1, hydroxycarboxylic acid receptor 1, prostaglandin E receptor 3, cannabinoid receptor 1 and proenkephalin were identified as the top 10 hub genes. The key genes and related pathways identified in this study provide genetic insight into the diversity in phenotypes between female and male patients with ARVC, and may facilitate therapeutic individualization.

摘要

致心律失常性右室心肌病(ARVC)是一种遗传性疾病,其临床表现存在性别差异。本研究旨在通过进行综合生物信息学分析来探讨与 ARVC 相关的性别差异。从基因表达综合数据库(GEO)中下载 GSE29819 基因表达数据集。使用在线分析工具 GEO2R 筛选差异表达基因(DEGs),然后对其进行富集分析和蛋白质-蛋白质相互作用(PPI)网络构建。使用 ClueGO 进行 DEGs 的功能注释。使用 Search Tool for the Retrieval of Interacting Genes 构建 PPI 网络,并使用 Cytoscape 可视化以识别模块和枢纽基因。与女性组相比,男性组共鉴定出 1188 个 DEGs,其中 915 个上调,273 个下调。KEGG 通路富集分析显示,上调的 DEGs 主要富集在“尼古丁成瘾”通路中,而下调的 DEGs 主要富集在“ECM-受体相互作用”和“蛋白质消化吸收”通路中。PPI 网络包含 899 个节点和 1627 个边,其中鉴定出 4 个显著模块。此外,激肽原 1、溶血磷脂酸受体 5、甲酰肽受体(FPR)2、腺苷酸环化酶 2、γ-氨基丁酸 B 型受体亚基 2、FPR1、羟基羧酸受体 1、前列腺素 E 受体 3、大麻素受体 1 和 proenkephalin 被鉴定为前 10 个枢纽基因。本研究中确定的关键基因和相关通路为 ARVC 女性和男性患者表型多样性提供了遗传学见解,并可能有助于治疗个体化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1f3/6390068/d34c3fb9e8fd/MMR-19-03-2238-g00.jpg

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