Department of Biotechnology and Food Microbiology, Poznan University of Life Sciences, ul. Wojska Polskiego 48, 60-627, Poznań, Poland.
Appl Microbiol Biotechnol. 2019 Mar;103(5):2367-2379. doi: 10.1007/s00253-018-09610-0. Epub 2019 Jan 23.
High-throughput function-based screening techniques remain the major bottleneck in the novel biocatalysts development pipeline. In the present study, we customized protocols for amylolytic activity determination (Somogyi-Nelson and starch-iodine tests) to micro-volume thermalcycler-based assays (linearity range 60-600 μM of reducing sugar, R = 0.9855; 0-2 mg/mL of starch, R = 0.9921, respectively). Exploitation of a thermalcycler enabled rapid and accurate temperature control, further reduction of reagents and samples volumes, and limited evaporation of the reaction mixtures, meeting several crucial requirements of an adequate enzymatic assay. In the optimized micro-volume Somogyi-Nelson protocol, we were able to reduce the time required for high-temperature heating sixfold (down to 5 min) and further increase sensitivity of the assay (tenfold), when compared to the previous MTP-based protocol. The optimized microassays have complementary scope of specificities: micro-starch-iodine test for endoglucanases, micro-Somogyi-Nelson test for exoglucanases. Due to rapid, micro-volume and high-throughput character, the methods can complement toolbox assisting development of novel biocatalysts and analysis of saccharides-containing samples.
高通量基于功能的筛选技术仍然是新型生物催化剂开发管道的主要瓶颈。在本研究中,我们针对淀粉水解活性测定(Somogyi-Nelson 和淀粉-碘试验)定制了微体积热循环仪测定方案(还原糖的线性范围为 60-600 μM,R=0.9855;淀粉的线性范围为 0-2 mg/mL,R=0.9921)。热循环仪的应用实现了快速且精确的温度控制,进一步减少了试剂和样品的用量,限制了反应混合物的蒸发,满足了充分酶测定的几个关键要求。在优化的微体积 Somogyi-Nelson 方案中,与之前基于 MTP 的方案相比,我们能够将高温加热所需的时间缩短六倍(降至 5 分钟),并进一步提高了测定的灵敏度(提高十倍)。优化后的微量分析具有互补的特异性范围:用于内切葡聚糖酶的微淀粉-碘试验,用于外切葡聚糖酶的微 Somogyi-Nelson 试验。由于其快速、微体积和高通量的特点,这些方法可以补充工具箱,辅助新型生物催化剂的开发和含糖类样品的分析。