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用于金门兼容载体灵活模块化组装的细菌表达载体文库(BEVA)。

A Bacterial Expression Vector Archive (BEVA) for Flexible Modular Assembly of Golden Gate-Compatible Vectors.

作者信息

Geddes Barney A, Mendoza-Suárez Marcela A, Poole Philip S

机构信息

Department of Plant Sciences, University of Oxford, Oxford, United Kingdom.

出版信息

Front Microbiol. 2019 Jan 14;9:3345. doi: 10.3389/fmicb.2018.03345. eCollection 2018.

DOI:10.3389/fmicb.2018.03345
PMID:30692983
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6339899/
Abstract

We present a Bacterial Expression Vector Archive (BEVA) for the modular assembly of bacterial vectors compatible with both traditional and Golden Gate cloning, utilizing the Type IIS restriction enzyme Esp3I, and have demonstrated its use for Golden Gate cloning in . Ideal for synthetic biology and other applications, this modular system allows a rapid, low-cost assembly of new vectors tailored to specific tasks. Using the principles outlined here, new modules (e.g., origin of replication for plasmids in other bacteria) can easily be designed for specific applications. It is hoped that this vector construction system will be expanded by the scientific community over time by creation of novel modules through an open source approach. To demonstrate the potential of the system, three example vectors were constructed and tested. The Golden Gate level 1 vector pOGG024 (pBBR1-based broad-host range and medium copy number) was used for gene expression in laboratory-cultured . The Golden Gate level 1 vector pOGG026 (RK2-based broad-host range, lower copy number and stable in the absence of antibiotic selection) was used to demonstrate bacterial gene expression in nitrogen-fixing nodules on pea plant roots formed by R. . Finally, the level 2 cloning vector pOGG216 (RK2-based broad-host range, medium copy number) was used to construct a dual reporter plasmid expressing green and red fluorescent proteins.

摘要

我们展示了一种细菌表达载体文库(BEVA),用于模块化组装与传统克隆和金门克隆均兼容的细菌载体,该文库利用IIS型限制酶Esp3I,并已证明其在[具体应用场景]中用于金门克隆。该模块化系统非常适合合成生物学和其他应用,它能够快速、低成本地组装针对特定任务定制的新载体。利用此处概述的原理,可以轻松为特定应用设计新模块(例如,其他细菌中质粒的复制起点)。希望随着时间的推移,科学界能够通过开源方法创建新模块,从而扩展这个载体构建系统。为了证明该系统的潜力,构建并测试了三个示例载体。金门1级载体pOGG024(基于pBBR1的广宿主范围和中拷贝数)用于在实验室培养的[具体生物]中进行基因表达。金门1级载体pOGG026(基于RK2的广宿主范围、低拷贝数且在无抗生素选择时稳定)用于证明在由[具体根瘤菌]形成的豌豆植物根上的固氮根瘤中进行细菌基因表达。最后,2级克隆载体pOGG216(基于RK2的广宿主范围、中拷贝数)用于构建表达绿色和红色荧光蛋白的双报告质粒。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/9315c939ab8d/fmicb-09-03345-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/e909710d8581/fmicb-09-03345-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/ffd88c2cf795/fmicb-09-03345-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/f38ce08296ac/fmicb-09-03345-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/e3f28bf85ab9/fmicb-09-03345-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/9315c939ab8d/fmicb-09-03345-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/e909710d8581/fmicb-09-03345-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/ffd88c2cf795/fmicb-09-03345-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/f38ce08296ac/fmicb-09-03345-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/e3f28bf85ab9/fmicb-09-03345-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1d8/6339899/9315c939ab8d/fmicb-09-03345-g005.jpg

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2
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ACS Synth Biol. 2015 Jul 17;4(7):853-9. doi: 10.1021/sb500372z. Epub 2015 Mar 23.
3
Functional optimization of gene clusters by combinatorial design and assembly.通过组合设计和组装实现基因簇的功能优化。
有益根瘤菌多样性的增加促进了蚕豆生长。
Nat Commun. 2024 Dec 12;15(1):10673. doi: 10.1038/s41467-024-54940-5.
4
Generating Site Saturation Mutagenesis Libraries and Transferring Them to Broad Host-Range Plasmids Using Golden Gate Cloning.利用 Golden Gate 克隆技术生成定点饱和突变文库并将其转移到广谱宿主范围质粒上。
Methods Mol Biol. 2025;2850:251-264. doi: 10.1007/978-1-0716-4220-7_14.
5
The iron nitrogenase reduces carbon dioxide to formate and methane under physiological conditions: A route to feedstock chemicals.在生理条件下,铁氮酶将二氧化碳还原为甲酸盐和甲烷:一种生产原料化学品的途径。
Sci Adv. 2024 Aug 16;10(33):eado7729. doi: 10.1126/sciadv.ado7729. Epub 2024 Aug 14.
6
Aspartate aminotransferase of has extended substrate specificity and metabolizes aspartate to enable N fixation in pea nodules.具有扩展的底物特异性的天冬氨酸氨基转移酶可代谢天冬氨酸以实现豌豆根瘤中的固氮作用。
Microbiology (Reading). 2024 Jul;170(7). doi: 10.1099/mic.0.001471.
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Nat Microbiol. 2024 Apr;9(4):1117-1129. doi: 10.1038/s41564-024-01619-8. Epub 2024 Mar 19.
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Nat Biotechnol. 2014 Dec;32(12):1241-9. doi: 10.1038/nbt.3063. Epub 2014 Nov 24.
4
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