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Full-Genome Sequence of Thalassotalea euphylliae H1, Isolated from a Montipora capitata Coral Located in Hawai'i.从位于夏威夷的头状鹿角珊瑚中分离出的叶状嗜盐菌H1的全基因组序列。
Microbiol Resour Announc. 2018 Nov 21;7(20). doi: 10.1128/MRA.01244-18. eCollection 2018 Nov.
2
Thalassotalea insulae sp. nov., isolated from tidal flat sediment.海岛海栖菌新种,从潮滩沉积物中分离得到。
Int J Syst Evol Microbiol. 2018 Apr;68(4):1321-1326. doi: 10.1099/ijsem.0.002671. Epub 2018 Feb 28.
3
Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma.从海水中分离得到的新种非典型海栖嗜盐菌及广温海栖嗜盐菌的修订描述
Int J Syst Evol Microbiol. 2018 Jan;68(1):271-276. doi: 10.1099/ijsem.0.002495. Epub 2017 Nov 16.
4
Thalassotalea litorea sp. nov., isolated from seashore sand.新种海滨嗜盐菌,从海滨沙地分离得到。
Int J Syst Evol Microbiol. 2017 Jul;67(7):2268-2273. doi: 10.1099/ijsem.0.001938. Epub 2017 Jul 12.
5
Thalassotalea crassostreae sp. nov., isolated from Pacific oyster.厚壳贻贝海栖菌新种,从太平洋牡蛎中分离得到。
Int J Syst Evol Microbiol. 2017 Jul;67(7):2195-2198. doi: 10.1099/ijsem.0.001923. Epub 2017 Jul 8.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
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7
Fast and accurate de novo genome assembly from long uncorrected reads.从长的未校正读段中进行快速且准确的从头基因组组装。
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
8
Thalassotalea euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens.新种光滑真叶珊瑚嗜盐菌,从火炬珊瑚光滑真叶珊瑚中分离得到。
Int J Syst Evol Microbiol. 2016 Dec;66(12):5039-5045. doi: 10.1099/ijsem.0.001466. Epub 2016 Aug 30.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释(RAST)。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.

嗜叶海杆菌H2菌株的全基因组序列

Complete Genome Sequence of Thalassotalea euphylliae Strain H2.

作者信息

Summers Stephen, Freckelton Marnie L, Nedved Brian T, Rice Scott A, Hadfield Michael G

机构信息

Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore.

Kewalo Marine Laboratory, University of Hawai'i, Honolulu, Hawaii, USA.

出版信息

Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01608-18. eCollection 2019 Jan.

DOI:10.1128/MRA.01608-18
PMID:30701255
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6346204/
Abstract

A bacterial isolate of Thalassotalea euphylliae H2 was collected from the coral Montipora capitata. MinION long reads were employed for scaffolding and complemented with short-read MiSeq sequences to permit complete genome assembly. The genome is approximately 4.36 Mb long, with 3,669 protein-coding genes, 92 tRNAs, and 21 rRNAs.

摘要

从卡氏微孔珊瑚中分离出一株厚叶海栖菌H2。利用MinION长读长进行支架搭建,并辅以短读长的MiSeq序列以实现完整的基因组组装。该基因组长度约为436万个碱基对,有3669个蛋白质编码基因、92个转运RNA和21个核糖体RNA。