从富含硫化物的盐泉中分离出的“嗜盐绿线菌”Chok-6的基因组序列
Genome Sequence of " Viridilinea halotolerans" Chok-6, Isolated from a Saline Sulfide-Rich Spring.
作者信息
Grouzdev Denis S, Burganskaya Ekaterina I, Krutkina Maria S, Sukhacheva Marina V, Gorlenko Vladimir M
机构信息
Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.
出版信息
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01614-18. eCollection 2019 Jan.
Abstract
The draft genome sequence of the green filamentous anoxygenic phototrophic (FAP) bacterium " Viridilinea halotolerans" strain Chok-6, isolated from a cold saline sulfide-rich spring near Lake Chokrak, is presented. The genome sequence is annotated for elucidation of the taxonomic position of Chok-6 and to extend the public genome database.
摘要
本文展示了从乔克拉湖附近富含硫化物的冷盐泉中分离出的绿色丝状无氧光合（FAP）细菌“嗜盐绿线菌”乔克-6菌株的基因组序列草图。对该基因组序列进行注释，以阐明乔克-6的分类地位并扩展公共基因组数据库。
相似文献
1
Genome Sequence of " Viridilinea halotolerans" Chok-6, Isolated from a Saline Sulfide-Rich Spring.从富含硫化物的盐泉中分离出的“嗜盐绿线菌”Chok-6的基因组序列
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01614-18. eCollection 2019 Jan.
2
Draft genome sequences of ' Chloroploca asiatica' and ' Viridilinea mediisalina', candidate representatives of the order: phylogenetic and taxonomic implications.“亚洲绿斑菌”和“中绿线菌”的基因组序列草图，该目候选代表：系统发育和分类学意义
Stand Genomic Sci. 2018 Oct 11;13:24. doi: 10.1186/s40793-018-0329-8. eCollection 2018.
3
Bacterial communities of the microbial mats of Chokrak sulfide springs.乔克拉克硫化物泉微生物席的细菌群落。
Arch Microbiol. 2019 Aug;201(6):795-805. doi: 10.1007/s00203-019-01648-6. Epub 2019 Mar 14.
4
'Candidatus Viridilinea mediisalina', a novel phototrophic Chloroflexi bacterium from a Siberian soda lake.中辐射色杆菌，一种来自西伯利亚苏打湖的新型光合绿屈挠菌。
FEMS Microbiol Lett. 2019 Mar 1;366(5). doi: 10.1093/femsle/fnz043.
5
Draft Genome Sequence of a Filamentous Anoxygenic Phototrophic Bacterium, " Roseilinea sp. Strain NK_OTU-006," Recovered from Metagenomic Data of a Hot Spring Microbial Mat.从温泉微生物垫宏基因组数据中获得的丝状无氧光合细菌“玫瑰线菌属NK_OTU - 006菌株”的基因组草图序列
Microbiol Resour Announc. 2020 Dec 10;9(50):e01104-20. doi: 10.1128/MRA.01104-20.
6
Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).硫化物氧化自养丝状无氧光合细菌绿弯菌属菌株MS-G（绿弯菌门）的基因组序列草图
Genome Announc. 2014 Sep 4;2(5):e00872-14. doi: 10.1128/genomeA.00872-14.
7
Draft Genome Sequence of a Fermenting Bacterium, "" 4-11, from a Low-Temperature Petroleum Reservoir in Russia.来自俄罗斯低温石油储层的发酵细菌“4-11”的基因组序列草图
Microbiol Resour Announc. 2018 Nov 29;7(21). doi: 10.1128/MRA.01345-18. eCollection 2018 Nov.
8
Draft Genome Sequence of Chloroflexus sp. Strain isl-2, a Thermophilic Filamentous Anoxygenic Phototrophic Bacterium Isolated from the Strokkur Geyser, Iceland.嗜热丝状不产氧光合细菌氯弯曲菌属菌株isl-2的基因组草图序列，该菌株从冰岛斯特罗库尔间歇泉分离得到
Genome Announc. 2016 Jul 21;4(4):e00714-16. doi: 10.1128/genomeA.00714-16.
9
Draft Genome Sequence of the Anoxygenic Phototrophic Bacterium sp. Strain U11-2br, Isolated from a Mountain Lake on the Ulagan Plateau.从乌拉干高原一个高山湖泊中分离出的无氧光合细菌菌株U11 - 2br的基因组序列草图
Microbiol Resour Announc. 2021 Oct 14;10(41):e0067521. doi: 10.1128/MRA.00675-21.
10
Sulfide-dependent Photoautotrophy in the Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus aggregans.丝状硫依赖光自养菌聚球蓝细菌的光自养作用。
Microbes Environ. 2019 Sep 25;34(3):304-309. doi: 10.1264/jsme2.ME19008. Epub 2019 Aug 8.
本文引用的文献
1
Draft genome sequences of ' Chloroploca asiatica' and ' Viridilinea mediisalina', candidate representatives of the order: phylogenetic and taxonomic implications.“亚洲绿斑菌”和“中绿线菌”的基因组序列草图，该目候选代表：系统发育和分类学意义
Stand Genomic Sci. 2018 Oct 11;13:24. doi: 10.1186/s40793-018-0329-8. eCollection 2018.
2
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.通过去重、聚合和评分策略从宏基因组中恢复基因组。
Nat Microbiol. 2018 Jul;3(7):836-843. doi: 10.1038/s41564-018-0171-1. Epub 2018 May 28.
3
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.关于将基因组数据用于原核生物分类学的拟议最低标准。
Int J Syst Evol Microbiol. 2018 Jan;68(1):461-466. doi: 10.1099/ijsem.0.002516.
4
Benthic phototrophic community from Kiran soda lake, south-eastern Siberia.来自东西伯利亚东南部 Kiran 苏打湖的底栖光养生物群落。
Extremophiles. 2018 Mar;22(2):211-220. doi: 10.1007/s00792-017-0989-0. Epub 2017 Dec 21.
5
BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.BusyBee Web：基于自举监督分箱和注释的宏基因组数据分析。
Nucleic Acids Res. 2017 Jul 3;45(W1):W171-W179. doi: 10.1093/nar/gkx348.
6
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes：一种新型通用宏基因组序列拼接软件
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
7
Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.通过利用基因组特征和标记基因信息对序列进行自动聚类，实现宏基因组重叠群的精确分类。
Sci Rep. 2016 Apr 12;6:24175. doi: 10.1038/srep24175.
8
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.MaxBin 2.0：一种从多个宏基因组数据集中恢复基因组的自动分箱算法。
Bioinformatics. 2016 Feb 15;32(4):605-7. doi: 10.1093/bioinformatics/btv638. Epub 2015 Oct 29.
9
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
10
Reconstruction of bacteriochlorophyll biosynthesis pathways in the filamentous anoxygenic phototrophic bacterium Oscillochloris trichoides DG-6 and evolution of anoxygenic phototrophs of the order Chloroflexales.丝状无氧光合细菌颤绿菌DG-6中细菌叶绿素生物合成途径的重建以及绿弯菌目的无氧光合生物的进化
Microbiology (Reading). 2015 Jan;161(Pt 1):120-130. doi: 10.1099/mic.0.082313-0. Epub 2014 Oct 21.
Zotero 插件