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微小RNA及微小RNA靶标分析工具概述

An Overview of miRNA and miRNA Target Analysis Tools.

作者信息

Lukasik Anna, Zielenkiewicz Piotr

机构信息

Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.

Department of Plant Molecular Biology, Institute of Experimental Plant Biology and Biotechnology, University of Warsaw, Warsaw, Poland.

出版信息

Methods Mol Biol. 2019;1932:65-87. doi: 10.1007/978-1-4939-9042-9_5.

DOI:10.1007/978-1-4939-9042-9_5
PMID:30701492
Abstract

microRNA molecules have been shown to play various significant roles in many physiological and pathophysiological processes in living organisms. The tremendous interest in these molecules has led to the significant development and constant release of a number of computational tools useful for basic as well as advanced miRNA-related analyses. These approaches have various constantly evolving utilities, such as detection, target prediction, functional annotation, and many others. In this chapter, we provide an overview of several computational tools useful for broadly defined plant miRNA analysis.

摘要

微小RNA分子已被证明在生物体的许多生理和病理生理过程中发挥着各种重要作用。对这些分子的极大兴趣导致了许多用于基础以及高级微小RNA相关分析的计算工具的显著发展和不断发布。这些方法具有各种不断发展的用途,如检测、靶标预测、功能注释等等。在本章中,我们概述了几种有助于广义植物微小RNA分析的计算工具。

相似文献

1
An Overview of miRNA and miRNA Target Analysis Tools.微小RNA及微小RNA靶标分析工具概述
Methods Mol Biol. 2019;1932:65-87. doi: 10.1007/978-1-4939-9042-9_5.
2
A compilation of Web-based research tools for miRNA analysis.基于网络的 miRNA 分析研究工具汇编。
Brief Funct Genomics. 2017 Sep 1;16(5):249-273. doi: 10.1093/bfgp/elw042.
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Computational prediction of microRNA genes.微小RNA基因的计算预测
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MicroRNA annotation in plants: current status and challenges.植物中的 microRNA 注释:现状与挑战。
Brief Bioinform. 2021 Sep 2;22(5). doi: 10.1093/bib/bbab075.
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Prediction of Plant miRNA Targets.植物微小RNA靶标的预测
Methods Mol Biol. 2019;1932:99-107. doi: 10.1007/978-1-4939-9042-9_7.
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An Introduction to Methods for Discovery and Functional Analysis of MicroRNAs in Plants.植物中微小RNA的发现与功能分析方法介绍
Methods Mol Biol. 2019;1932:1-14. doi: 10.1007/978-1-4939-9042-9_1.
7
ceRNAs in plants: computational approaches and associated challenges for target mimic research.植物中的 ceRNA:计算方法及靶 mimic 研究相关挑战
Brief Bioinform. 2018 Nov 27;19(6):1273-1289. doi: 10.1093/bib/bbx058.
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PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation.PmiRDiscVali:一个植物 microRNA 发现和验证的集成管道。
BMC Genomics. 2019 Feb 13;20(1):133. doi: 10.1186/s12864-019-5478-7.
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Computational prediction of plant miRNA targets.植物 miRNA 靶标的计算预测
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Computational Approaches and Related Tools to Identify MicroRNAs in a Species: A Bird's Eye View.计算方法及相关工具在物种中识别 microRNA:鸟瞰图。
Interdiscip Sci. 2018 Sep;10(3):616-635. doi: 10.1007/s12539-017-0223-x. Epub 2017 Mar 30.

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