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从酿酒酵母中随机克隆弯曲DNA片段及其结构的初步表征。

Random cloning of bent DNA segments from Saccharomyces cerevisiae and primary characterization of their structures.

作者信息

Mizuno T, Itoh K

机构信息

Laboratory of Microbiology, School of Agriculture, Nagoya University, Japan.

出版信息

Mol Gen Genet. 1988 Oct;214(2):249-56. doi: 10.1007/BF00337718.

DOI:10.1007/BF00337718
PMID:3070349
Abstract

Until recently it was assumed that any short segment of DNA could be approximated as a straight rod. Many instances, however, have been reported in which the helical axis is curved. We have devised a simple method for selective identification of DNA segments containing a sequence-directed bend (curvature), by means of a two-dimensional polyacrylamide gel electrophoresis. In order to gain general insights into the structural features and the functional significance of sequence-directed bends, a bank of plasmids carrying bent DNA inserts from the Saccharomyces cerevisiae total genomic DNA was constructed. Primary characterizations of a set of bent DNA segments randomly cloned from S. cerevisiae are presented. One of the cloned DNA segments appears to be derived from a yeast plasmid, the 2 microns circle DNA.

摘要

直到最近,人们一直认为任何短片段的DNA都可以近似看作是一根直杆。然而,已经有许多报道称,其螺旋轴是弯曲的。我们设计了一种简单的方法,通过二维聚丙烯酰胺凝胶电泳来选择性鉴定含有序列导向弯曲(曲率)的DNA片段。为了全面了解序列导向弯曲的结构特征和功能意义,构建了一组携带来自酿酒酵母全基因组DNA的弯曲DNA插入片段的质粒库。本文展示了从酿酒酵母中随机克隆的一组弯曲DNA片段的初步特征。其中一个克隆的DNA片段似乎源自酵母质粒,即2微米环状DNA。

相似文献

1
Random cloning of bent DNA segments from Saccharomyces cerevisiae and primary characterization of their structures.从酿酒酵母中随机克隆弯曲DNA片段及其结构的初步表征。
Mol Gen Genet. 1988 Oct;214(2):249-56. doi: 10.1007/BF00337718.
2
Random cloning of bent DNA segments from Escherichia coli chromosome and primary characterization of their structures.从大肠杆菌染色体中随机克隆弯曲DNA片段及其结构的初步表征。
Nucleic Acids Res. 1987 Sep 11;15(17):6827-41. doi: 10.1093/nar/15.17.6827.
3
Primary characterization of curved DNA segments cloned from Streptomyces DNA with extremely high G/C-contents.
Agric Biol Chem. 1991 Jan;55(1):173-80.
4
Chimeric plasmids for cloning of deoxyribonucleic acid sequences in Saccharomyces cerevisiae.用于在酿酒酵母中克隆脱氧核糖核酸序列的嵌合质粒。
J Bacteriol. 1979 Oct;140(1):73-82. doi: 10.1128/jb.140.1.73-82.1979.
5
The 2 micron circle plasmid of Saccharomyces cerevisiae.酿酒酵母的2微米环状质粒。
Yeast. 1988 Mar;4(1):27-40. doi: 10.1002/yea.320040104.
6
Bending of DNA segments with Saccharomyces cerevisiae autonomously replicating sequence activity, isolated from basidiomycete mitochondrial linear plasmids.从担子菌线粒体线性质粒中分离出的具有酿酒酵母自主复制序列活性的DNA片段的弯曲
Mol Gen Genet. 1993 Feb;237(1-2):1-9. doi: 10.1007/BF00282777.
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In vivo ligation of linear DNA molecules to circular forms in the yeast Saccharomyces cerevisiae.在酿酒酵母中,将线性DNA分子在体内连接成环状形式。
J Bacteriol. 1983 Aug;155(2):747-54. doi: 10.1128/jb.155.2.747-754.1983.
8
Nucleotide sequence of the yeast plasmid.酵母质粒的核苷酸序列。
Nature. 1980 Aug 28;286(5776):860-5. doi: 10.1038/286860a0.
9
All 16 centromere DNAs from Saccharomyces cerevisiae show DNA curvature.来自酿酒酵母的所有16种着丝粒DNA均表现出DNA弯曲。
Nucleic Acids Res. 1999 Mar 15;27(6):1444-9. doi: 10.1093/nar/27.6.1444.
10
Site-specific recombination of yeast 2-micron DNA in vitro.酵母2微米DNA的体外位点特异性重组
Proc Natl Acad Sci U S A. 1983 Dec;80(23):7284-8. doi: 10.1073/pnas.80.23.7284.

引用本文的文献

1
Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription.体内无经典反式激活因子时的转录起始:酵母管家腺苷酸激酶基因AKY2核心启动子侧翼的DNA弯折定位核小体并组成性激活转录。
Nucleic Acids Res. 2002 Oct 1;30(19):4199-207. doi: 10.1093/nar/gkf551.

本文引用的文献

1
Bent helical structure in kinetoplast DNA.动基体 DNA 的弯曲螺旋结构。
Proc Natl Acad Sci U S A. 1982 Dec;79(24):7664-8. doi: 10.1073/pnas.79.24.7664.
2
The locus of sequence-directed and protein-induced DNA bending.序列导向和蛋白质诱导的DNA弯曲位点。
Nature. 1984;308(5959):509-13. doi: 10.1038/308509a0.
3
The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.pUC质粒,一种源自M13mp7的用于插入诱变和使用合成通用引物进行测序的系统。
Gene. 1982 Oct;19(3):259-68. doi: 10.1016/0378-1119(82)90015-4.
4
Nucleotide sequence of the yeast plasmid.酵母质粒的核苷酸序列。
Nature. 1980 Aug 28;286(5776):860-5. doi: 10.1038/286860a0.
5
Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella.与沙门氏菌tRNA操纵子中异常启动子突变相关的DNA构象变化。
Cell. 1984 Dec;39(3 Pt 2):643-52. doi: 10.1016/0092-8674(84)90471-9.
6
DNA bending at adenine . thymine tracts.腺嘌呤·胸腺嘧啶序列处的DNA弯曲
Nature. 1986;320(6062):501-6. doi: 10.1038/320501a0.
7
Signals for transcription initiation and termination in the Saccharomyces cerevisiae plasmid 2 micron circle.酿酒酵母质粒2μm环中转录起始和终止的信号
Mol Cell Biol. 1985 Oct;5(10):2770-80. doi: 10.1128/mcb.5.10.2770-2780.1985.
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Bent DNA at a yeast autonomously replicating sequence.酵母自主复制序列处的弯曲DNA
Nature. 1986;324(6092):87-9. doi: 10.1038/324087a0.
9
Estimation of wedge components in curved DNA.弯曲DNA中楔形组件的估计。
Nature. 1987;326(6114):720-2. doi: 10.1038/326720a0.
10
The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101.大肠杆菌的整合宿主因子与质粒pSC101复制起点处的弯曲DNA结合。
Cell. 1987 Jun 5;49(5):709-17. doi: 10.1016/0092-8674(87)90547-2.