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肌萎缩侧索硬化症患者和对照者外周血单个核细胞的 RNA-Seq 分析。

RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls.

机构信息

Genomic and post-Genomic Center, IRCCS Mondino Foundation, Pavia, Italy.

Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy.

出版信息

Sci Data. 2019 Feb 5;6:190006. doi: 10.1038/sdata.2019.6.

Abstract

Coding and long non-coding RNA (lncRNA) metabolism is now revealing its crucial role in Amyotrophic Lateral Sclerosis (ALS) pathogenesis. In this work, we present a dataset obtained via Illumina RNA-seq analysis on Peripheral Blood Mononuclear Cells (PBMCs) from sporadic and mutated ALS patients (mutations in FUS, TARDBP, SOD1 and VCP genes) and healthy controls. This dataset allows the whole-transcriptome characterization of PBMCs content, both in terms of coding and non-coding RNAs, in order to compare the disease state to the healthy controls, both for sporadic patients and for mutated patients. Our dataset is a starting point for the omni-comprehensive analysis of coding and lncRNAs, from an easy to withdraw, manage and store tissue that shows to be a suitable model for RNA profiling in ALS.

摘要

编码和长非编码 RNA(lncRNA)代谢现在揭示了其在肌萎缩侧索硬化症(ALS)发病机制中的关键作用。在这项工作中,我们展示了通过 Illumina RNA-seq 分析从散发性和突变性 ALS 患者(FUS、TARDBP、SOD1 和 VCP 基因突变)和健康对照者外周血单个核细胞(PBMC)获得的数据集。该数据集允许对 PBMC 内容进行全转录组特征描述,包括编码和非编码 RNA,以便将疾病状态与健康对照进行比较,包括散发性患者和突变性患者。我们的数据集是对编码和 lncRNA 进行全面综合分析的起点,从易于提取、管理和存储的组织开始,该组织显示出是 ALS 中 RNA 分析的合适模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f95/6362931/6e93e0ed05cb/sdata20196-f1.jpg

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