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一种应用于国家监测数据的算法,用于早期发现柬埔寨的登革热重大疫情。

An algorithm applied to national surveillance data for the early detection of major dengue outbreaks in Cambodia.

机构信息

Epidemiology and Public Health Unit, Institut Pasteur du Cambodge, Phnom Penh, Cambodia.

Centre National de Malariologie (CNM), Phnom Penh, Cambodia.

出版信息

PLoS One. 2019 Feb 7;14(2):e0212003. doi: 10.1371/journal.pone.0212003. eCollection 2019.

DOI:10.1371/journal.pone.0212003
PMID:30730979
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6366704/
Abstract

Dengue is a national priority disease in Cambodia. The Cambodian National Dengue Surveillance System is based on passive surveillance of dengue-like inpatients reported by public hospitals and on a sentinel, pediatric hospital-based active surveillance system. This system works well to assess trends but the sensitivity of the early warning and time-lag to usefully inform hospitals can be improved. During The ECOnomic development, ECOsystem MOdifications, and emerging infectious diseases Risk Evaluation (ECOMORE) project's knowledge translation platforms, Cambodian hospital staff requested an early warning tool to prepare for major outbreaks. Our objective was therefore to find adapted tools to improve the early warning system and preparedness. Dengue data was provided by the National Dengue Control Program (NDCP) and are routinely obtained through passive surveillance. The data were analyzed at the provincial level for eight Cambodian provinces during 2008-2015. The R surveillance package was used for the analysis. We evaluated the effectiveness of Bayesian algorithms to detect outbreaks using count data series, comparing the current count to an expected distribution obtained from observations of past years. The analyses bore on 78,759 patients with dengue-like syndromes. The algorithm maximizing sensitivity and specificity for the detection of major dengue outbreaks was selected in each province. The overall sensitivity and specificity were 73% and 97%, respectively, for the detection of significant outbreaks during 2008-2015. Depending on the province, sensitivity and specificity ranged from 50% to 100% and 75% to 100%, respectively. The final algorithm meets clinicians' and decisionmakers' needs, is cost-free and is easy to implement at the provincial level.

摘要

登革热是柬埔寨的国家优先疾病。柬埔寨国家登革热监测系统基于公立医院报告的登革热样住院患者的被动监测和一个基于哨点、儿科医院的主动监测系统。该系统很好地评估了趋势,但早期预警的敏感性和对医院有用的时间滞后可以得到改善。在 ECOnomic development, ECOsystem MOdifications, and emerging infectious diseases Risk Evaluation (ECOMORE) 项目的知识转化平台期间,柬埔寨医院工作人员要求使用早期预警工具为重大疫情爆发做好准备。因此,我们的目标是找到适应性工具来改进早期预警系统和准备工作。登革热数据由国家登革热控制计划(NDCP)提供,并通过被动监测常规获取。2008 年至 2015 年期间,在柬埔寨的 8 个省份进行了省级数据分析。使用 R 监测包进行了分析。我们评估了贝叶斯算法在使用计数数据序列检测疫情时的有效性,将当前计数与过去几年观察到的预期分布进行比较。分析涉及 78759 例登革热样综合征患者。在每个省份中,都选择了用于检测重大登革热疫情的具有最高敏感性和特异性的算法。2008-2015 年期间,用于检测重大疫情的算法的总体敏感性和特异性分别为 73%和 97%。根据省份的不同,敏感性和特异性范围分别为 50%-100%和 75%-100%。最终算法满足临床医生和决策者的需求,是免费的,易于在省级层面实施。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b160/6366704/0a35b9e1c050/pone.0212003.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b160/6366704/f35a86ddbee3/pone.0212003.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b160/6366704/0a35b9e1c050/pone.0212003.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b160/6366704/f35a86ddbee3/pone.0212003.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b160/6366704/0a35b9e1c050/pone.0212003.g002.jpg

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