用于六种未充分利用的印度尼西亚水果基因组组装的数据集。
Datasets for genome assembly of six underutilized Indonesian fruits.
作者信息
Matra Deden Derajat, Ritonga Arya Widura, Natawijaya Azis, Poerwanto Roedhy, Siregar Ulfah Juniarti, Widodo Winarso Drajad, Inoue Eiichi
机构信息
Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
Research and Development Division, Mekarsari Fruit Garden, Indonesia.
出版信息
Data Brief. 2018 Dec 28;22:960-963. doi: 10.1016/j.dib.2018.12.070. eCollection 2019 Feb.
Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including (, , , , , and . These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following (DRA007398), (DRA007394), (DRA007395), (DRA007393), (DRA007396), (DRA007397).
印度尼西亚热带水果的遗传多样性很高。然而，基因组学研究仍然非常有限。在这篇数据文章中，对六种未充分利用的印度尼西亚水果进行了分析，以估计其基因组大小和基因组组装的部分数据，包括（具体水果名称未给出）。这些基因组数据可用于构建这些物种的植物系统学和育种计划的分子标记。我们的基因组数据使用BGISeq - 500对末端配对文库进行测序，每个物种产生约5千兆碱基。原始序列已存于日本DNA数据库（DDBJ）的DDBJ生物项目下，登录号为PRJDB7265，每个物种的序列也已存入DDBJ读取存档，分别为（具体物种编号未给出）（DRA007398）、（具体物种编号未给出）（DRA007394）、（具体物种编号未给出）（DRA007395）、（具体物种编号未给出）（DRA007393）、（具体物种编号未给出）（DRA007396）、（具体物种编号未给出）（DRA007397）。
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