.假种皮首次从头转录组组装的数据集。 需注意，原文中“of the arillode of.”后面似乎缺少具体内容，这可能会影响对整个句子更准确完整的理解。
Dataset of the first de novo transcriptome assembly of the arillode of .
作者信息
Matra Deden Derajat, Ritonga Arya Widura, Natawijaya Azis, Poerwanto Roedhy, Widodo Winarso Drajad, Inoue Eiichi
机构信息
Department of Agronomy and Horticulture, Bogor Agricultural University, Indonesia.
Research and Development Division, Mekarsari Fruit Garden, Indonesia.
出版信息
Data Brief. 2018 Dec 13;22:332-335. doi: 10.1016/j.dib.2018.12.031. eCollection 2019 Feb.
Müll. Arg. (rambai) is one of the underutilized fruit natives to Indonesia, Thailand, and Malaya Peninsula and it is mostly cultivated in Java island (Lim, 2012) [1]. The edible part of fruits is white and reddish arillodes in which having sweet to acid-sweet tastes. However, nucleotide as well as transcriptome information of this species is still scarce, no information has been deposited in GenBank. In this data article, we performed for the first time of de novo assembly of transcriptome using paired-end Illumina technology. The assembled contigs were constructed using Trinity and after filtering and clustering, produced 37,077 contigs. The contig ranged 201-4972 bp and N50 has 696 bp. The contig was annotated with several database such as SwissProt, TrEMBL, nr and nt NCBI databases. The raw reads were deposited in DDBJ with DRA numbers, DRA007358. The assembled contigs of transcriptome are deposited in the DDBJ TSA with accession number, IADP01000001-IADP01037077 and also can be accessed at http://rujakbase.id.
穆勒氏番荔枝（rambai）是印度尼西亚、泰国和马来半岛未得到充分利用的本土水果之一，主要种植于爪哇岛（林，2012年）[1]。其果实的可食用部分为白色和带红色的假种皮，味道从甜到酸甜。然而，该物种的核苷酸以及转录组信息仍然匮乏，在GenBank中尚无相关信息存档。在本数据文章中，我们首次使用双末端Illumina技术对转录组进行了从头组装。使用Trinity构建组装后的重叠群，经过过滤和聚类后，得到了37,077个重叠群。重叠群长度范围为201 - 4972 bp，N50为696 bp。该重叠群用多个数据库进行了注释，如SwissProt、TrEMBL、nr和NCBI的nt数据库。原始读段已存入DDBJ，编号为DRA007358。转录组的组装重叠群存入了DDBJ的TSA，登录号为IADP01000001 - IADP01037077，也可在http://rujakbase.id上获取。
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