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线虫秀丽隐杆线虫无细胞提取物中III类基因的转录

Transcription of class III genes in cell-free extracts from the nematode Caenorhabditis elegans.

作者信息

Honda B M, Devlin R H, Nelson D W, Khosla M

出版信息

Nucleic Acids Res. 1986 Jan 24;14(2):869-81. doi: 10.1093/nar/14.2.869.

DOI:10.1093/nar/14.2.869
PMID:3080734
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC339470/
Abstract

Using the nematode Caenorhabditis elegans as a model organism, we have prepared cell-free extracts which accurately transcribe cloned homologous 5S RNA genes in vitro. These extracts also transcribe cloned tRNA genes, and actively process the resulting products. Unlike tRNA genes, transcription of 5S DNA shows some species specificity: C. elegans extracts do not transcribe Xenopus 5S RNA genes, nor does a Xenopus extract efficiently transcribe the heterologous nematode 5S DNA. However, addition of limiting amounts of C. elegans fractions permits Xenopus extracts to transcribe nematode 5S RNA genes. This apparent biochemical "complementation" may provide an assay to purify 5S RNA gene-specific factors from C. elegans.

摘要

我们以线虫秀丽隐杆线虫作为模式生物,制备了无细胞提取物,该提取物能够在体外准确转录克隆的同源5S RNA基因。这些提取物还能转录克隆的tRNA基因,并对产生的产物进行活性加工。与tRNA基因不同,5S DNA的转录表现出一定的物种特异性:秀丽隐杆线虫提取物不能转录非洲爪蟾的5S RNA基因,非洲爪蟾提取物也不能有效地转录异源线虫的5S DNA。然而,添加有限量的秀丽隐杆线虫组分可使非洲爪蟾提取物转录线虫的5S RNA基因。这种明显的生化“互补”可能为从秀丽隐杆线虫中纯化5S RNA基因特异性因子提供一种检测方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/fbe98444cb0a/nar00271-0257-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/d4e5052670bc/nar00271-0252-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/9b820a6a9a07/nar00271-0252-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/a77726739528/nar00271-0253-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/f2fdb0e7466c/nar00271-0255-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/265928a759fc/nar00271-0256-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/fbe98444cb0a/nar00271-0257-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/d4e5052670bc/nar00271-0252-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/9b820a6a9a07/nar00271-0252-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/a77726739528/nar00271-0253-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/f2fdb0e7466c/nar00271-0255-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/265928a759fc/nar00271-0256-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c444/339470/fbe98444cb0a/nar00271-0257-a.jpg

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Two highly conserved transcribed regions in the 5S DNA repeats of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.秀丽隐杆线虫和布里格氏秀丽隐杆线虫5S DNA重复序列中的两个高度保守转录区域。
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Transcriptionally active and inactive gene repeats within the D. melanogaster 5S RNA gene cluster.黑腹果蝇5S RNA基因簇内转录活性和非活性基因重复序列。
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引用本文的文献

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Mol Cell Biol. 1998 Feb;18(2):703-9. doi: 10.1128/MCB.18.2.703.
2
A trans-spliced leader sequence on actin mRNA in C. elegans.秀丽隐杆线虫肌动蛋白信使核糖核酸上的一个反式剪接前导序列。
Cell. 1987 Jun 19;49(6):753-61. doi: 10.1016/0092-8674(87)90613-1.
3
Unusual sequences, homologous to 5S RNA, in ribosomal DNA repeats of the nematode Meloidogyne arenaria.

本文引用的文献

1
5' flanking sequence signals are required for activity of silkworm alanine tRNA genes in homologous in vitro transcription systems.家蚕丙氨酸tRNA基因在同源体外转录系统中的活性需要5'侧翼序列信号。
Cell. 1980 Nov;22(1 Pt 1):171-8. doi: 10.1016/0092-8674(80)90165-8.
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Critical periods in the development of the Caenorhabditis elegans dauer larva.秀丽隐杆线虫 dauer 幼虫发育过程中的关键时期。
Dev Biol. 1981 May;84(1):27-40. doi: 10.1016/0012-1606(81)90367-5.
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Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factor.
在南方根结线虫核糖体DNA重复序列中,与5S RNA同源的异常序列。
J Mol Evol. 1988;27(3):222-7. doi: 10.1007/BF02100078.
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Two highly conserved transcribed regions in the 5S DNA repeats of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.秀丽隐杆线虫和布里格氏秀丽隐杆线虫5S DNA重复序列中的两个高度保守转录区域。
Nucleic Acids Res. 1989 Nov 11;17(21):8657-67. doi: 10.1093/nar/17.21.8657.
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Mutant Caenorhabditis elegans RNA polymerase II with a 20,000-fold reduced sensitivity to alpha-amanitin.对α-鹅膏蕈碱敏感性降低20000倍的突变型秀丽隐杆线虫RNA聚合酶II。
Genetics. 1990 Dec;126(4):889-98. doi: 10.1093/genetics/126.4.889.
6
Specific transcription of an Acanthamoeba castellanii 5S RNA gene in homologous nuclear extracts.棘阿米巴5S RNA基因在同源核提取物中的特异性转录。
Nucleic Acids Res. 1991 Apr 11;19(7):1681-6. doi: 10.1093/nar/19.7.1681.
哺乳动物核糖体RNA基因精确转录所需因子的分级分离与重组:一种物种依赖性起始因子的鉴定
Nucleic Acids Res. 1982 Nov 11;10(21):6659-70. doi: 10.1093/nar/10.21.6659.
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Promoter of a eukaryotic tRNAPro gene is composed of three noncontiguous regions.真核生物tRNAPro基因的启动子由三个不连续的区域组成。
Proc Natl Acad Sci U S A. 1982 Feb;79(4):1195-9. doi: 10.1073/pnas.79.4.1195.
5
Caenorhabditis elegans: getting to know you.秀丽隐杆线虫:认识你
Science. 1984 Jul 6;225(4657):40-2. doi: 10.1126/science.6729468.
6
The role of stable complexes that repress and activate eucaryotic genes.抑制和激活真核基因的稳定复合物的作用。
Cell. 1984 Jun;37(2):359-65. doi: 10.1016/0092-8674(84)90366-0.
7
The extent of a eukaryotic tRNA gene. 5'- and 3'-flanking sequence dependence for transcription and stable complex formation.真核生物tRNA基因的范围。转录和稳定复合物形成对5'和3'侧翼序列的依赖性。
J Biol Chem. 1984 Feb 10;259(3):1461-7.
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The embryonic cell lineage of the nematode Caenorhabditis elegans.秀丽隐杆线虫的胚胎细胞谱系。
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J Biol Chem. 1983 Nov 10;258(21):12804-9.
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Upstream elements necessary for optimal function of the hsp 70 promoter in transformed flies.转化果蝇中hsp 70启动子最佳功能所需的上游元件。
Cell. 1984 Sep;38(2):391-8. doi: 10.1016/0092-8674(84)90494-x.