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从冰川中分离出的新鞘氨醇菌属新种,新鞘氨醇菌,新科类固醇杆菌科的提议及涅斯捷连科的修订描述。

Stenotrophobium rhamnosiphilum gen. nov., sp. nov., isolated from a glacier, proposal of Steroidobacteraceae fam. nov. in Nevskiales and emended description of the family Nevskiaceae.

作者信息

Liu Qing, Liu Hong-Can, Zhou Yu-Guang, Xin Yu-Hua

机构信息

1​China General Microbiological Culture Collection Center (CGMCC), Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.

2​State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 May;69(5):1404-1410. doi: 10.1099/ijsem.0.003327. Epub 2019 Mar 1.

Abstract

A Gram-stain-negative strain, designated GT1R17, was isolated from an ervoconite sample collected from Gawalong glacier in the Tibet Autonomous Region, PR China. Strain GT1R17 was catalase- and oxidase-positive, and grew optimally at 20-25°C and pH 7.0. The highest level of 16S rRNA gene sequence similarities were found to members of the genera Nevskia(92.27-93.15 %) and Hydrocarboniphaga(91.92-92.96 %). Phylogenetic analyses based on 16S rRNA gene sequences and genomic data revealed that the strain GT1R17 belonged to the family Nevskiaceae, but could not be assigned to any known genera. The genomic DNA G+C content was 54.4 mol%. The major fatty acids were summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c), summed feature 8 (C18 : 1 ω7c and/or C18 : 1ω6c), C16 : 0, iso-C16 : 0 and summed feature 2 (C14 : 0 3OH and/or iso-C16 : 1 I). The polar lipids were phosphatidylglycerol, phosphatidylethanolamine and one unidentified lipid. The ubiquinone was Q-8. On the basis of the phenotypic, chemotaxonomic, genotypic and phylogenetic data, a novel species of a new genus,Stenotrophobiumrhamnosiphilum gen. nov., sp. nov. within the family Nevskiaceae, is proposed, with GT1R17 (=CGMCC 1.16137=NBRC 113346) as the type strain. In addition, phylogenetic analyses revealed that Steroidobacter and Povalibacter formed an independent clade in the order Nevskiales and were away from the families Nevskiaceae, Algiphilaceae and Salinisphaeraceae. Therefore, we propose to remove Steroidobacter and Povalibacter from the family Nevskiaceae and propose a new family Steroidobacteraceae in the order Nevskiales.

摘要

从中国西藏自治区嘎瓦龙冰川采集的一块辉砷镍矿样本中分离出一株革兰氏阴性菌,命名为GT1R17。GT1R17菌株过氧化氢酶和氧化酶呈阳性,在20-25°C和pH 7.0条件下生长最佳。16S rRNA基因序列相似性最高的是涅夫斯基氏菌属(92.27-93.15%)和嗜烃菌属(91.92-92.96%)的成员。基于16S rRNA基因序列和基因组数据的系统发育分析表明,GT1R17菌株属于涅夫斯基氏菌科,但无法归入任何已知属。基因组DNA的G+C含量为54.4 mol%。主要脂肪酸为特征性总和3(C16:1ω6c和/或C16:1ω7c)、特征性总和8(C18:1ω7c和/或C18:1ω6c)、C16:0、异C16:0和特征性总和2(C14:0 3OH和/或异C16:1 I)。极性脂质为磷脂酰甘油、磷脂酰乙醇胺和一种未鉴定的脂质。泛醌为Q-8。基于表型、化学分类、基因型和系统发育数据,提出了涅夫斯基氏菌科内一个新属的新物种,即嗜鼠窄食单胞菌,新属,新种,模式菌株为GT1R17(=CGMCC 1.16137=NBRC 113346)。此外,系统发育分析表明,甾体杆菌属和波瓦利菌属在涅夫斯基氏菌目中形成一个独立的分支,与涅夫斯基氏菌科、嗜藻菌科和盐球菌科不同。因此,我们建议将甾体杆菌属和波瓦利菌属从涅夫斯基氏菌科中移除,并在涅夫斯基氏菌目中提出一个新的科,即甾体杆菌科。

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