Biological Resource Center/Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea.
Department of Integrative Food, Bioscience and Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea.
Int J Syst Evol Microbiol. 2021 Nov;71(11). doi: 10.1099/ijsem.0.005084.
A Gram-stain-negative, aerobic, rod-shaped strain (R2A-3) was isolated from the toxin-producing dinoflagellate and identified as a novel genus and new species based on a polyphasic taxonomic approach. The optimum conditions for growth of the strain were at 25 °C, pH 8.0 and in the presence of 3 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA genes and 92 core genes sets revealed that strain R2A-3 belongs to the family in the class and represented an independent taxon separated from other genera. The 16S rRNA gene of strain R2A-3 showed the highest sequence similarity to TG408 (95.2%), HA-01 (94.1%) and NH6-24 (93.2%), and less than 92.8 % similarity to other genera in the family . The genome length of strain R2A-3 was 3608892 bp with 65.2 mol% G+C content. Summed feature 8 (comprising C 7 and/or C 6) was the major fatty acid (>10 %). Diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine were detected as the major polar lipids. The major respiratory quinone was ubiquinone-8. According to its phylogenetic, phenotypic, chemotaxonomic and genomic features, strain R2A-3 represents a new species in the new genus of the family . It is recommended to name it gen. nov., sp. nov. The type strain is R2A-3 (=KCTC 82469=GDMCC 1.2523).
一株革兰氏阴性、需氧、杆状菌株(R2A-3)从产毒素甲藻中分离出来,并基于多相分类方法鉴定为一个新属和新种。该菌株的最佳生长条件为 25°C、pH8.0 和 3%(w/v)NaCl。基于 16S rRNA 基因和 92 个核心基因集的系统发育分析表明,菌株 R2A-3 属于 科的 纲,代表了一个与其他属分离的独立分类群。菌株 R2A-3 的 16S rRNA 基因与 TG408(95.2%)、HA-01(94.1%)和 NH6-24(93.2%)的序列相似度最高,与 科中其他属的相似度低于 92.8%。菌株 R2A-3 的基因组大小为 3608892bp,G+C 含量为 65.2%mol。Summed feature 8(包含 C7 和/或 C6)是主要脂肪酸(>10%)。二磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺被检测为主要极性脂。主要呼吸醌为泛醌-8。根据其系统发育、表型、化学生态和基因组特征,菌株 R2A-3 代表了 科中新属的一个新种。建议将其命名为新属新种。模式菌株为 R2A-3(=KCTC 82469=GDMCC 1.2523)。