Program in Computational and Molecular Biophysics, Washington University, School of Medicine, Saint Louis, Missouri 63110, USA.
Department of Chemistry, Washington University in Saint Louis, Saint Louis, Missouri 63130, USA.
J Chem Phys. 2019 Feb 28;150(8):084104. doi: 10.1063/1.5081060.
Pauli repulsion is a key component of any theory of intermolecular interactions. Although Pauli or exchange repulsion has its origin in the quantum mechanical nature of electrons, it is possible to describe the resulting energetic effects via a classical model in terms of the overlap of electron densities. In fact, closed shell intermolecular repulsion can be explained as a diminution of election density in the internuclear region resulting in decreased screening of nuclear charges and increased nuclear-nuclear repulsion. We provide a concise anisotropic repulsion formulation using the atomic multipoles from the Atomic Multipole Optimized Energetics for Biomolecular Applications force field to describe the electron density at each atom in a larger system. Mathematically, the proposed model consists of damped pairwise exponential multipolar repulsion interactions truncated at short range, which are suitable for use in compute-intensive biomolecular force fields and molecular dynamics simulations. Parameters for 26 atom classes encompassing most organic molecules are derived from a fit to Symmetry Adapted Perturbation Theory exchange repulsion energies for the S101 dimer database. Several applications of the multipolar Pauli repulsion model are discussed, including noble gas interactions, analysis of stationary points on the water dimer potential surface, and the directionality of several halogen bonding interactions.
泡利排斥是任何分子间相互作用理论的关键组成部分。尽管泡利或交换排斥源于电子的量子力学性质,但可以通过经典模型根据电子密度的重叠来描述由此产生的能量效应。事实上,满壳层分子间排斥可以解释为核间区域电子密度的减小,导致核电荷屏蔽减少和核-核排斥增加。我们提供了一种简洁的各向异性排斥公式,使用原子多极子从原子多极子优化生物分子应用的能量学力场来描述较大系统中每个原子的电子密度。从数学上讲,所提出的模型由短程截断的阻尼成对指数多极排斥相互作用组成,非常适合用于计算密集型生物分子力场和分子动力学模拟。涵盖大多数有机分子的 26 个原子类别的参数是根据对 S101 二聚体数据库的对称适应微扰理论交换排斥能的拟合得出的。讨论了多极泡利排斥模型的几种应用,包括稀有气体相互作用、水二聚体势能表面上稳定点的分析以及几种卤键相互作用的方向性。