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基于胸部四维 CT 的降维技术提取稳健放射组学特征的研究。

Investigation of thoracic four-dimensional CT-based dimension reduction technique for extracting the robust radiomic features.

机构信息

Department of Radiation Oncology, Tohoku University Graduate School of Medicine, Sendai, Japan.

Department of Radiation Oncology, Tohoku University Graduate School of Medicine, Sendai, Japan.

出版信息

Phys Med. 2019 Feb;58:141-148. doi: 10.1016/j.ejmp.2019.02.009. Epub 2019 Feb 19.

DOI:10.1016/j.ejmp.2019.02.009
PMID:30824145
Abstract

Robust feature selection in radiomic analysis is often implemented using the RIDER test-retest datasets. However, the CT Protocol between the facility and test-retest datasets are different. Therefore, we investigated possibility to select robust features using thoracic four-dimensional CT (4D-CT) scans that are available from patients receiving radiation therapy. In 4D-CT datasets of 14 lung cancer patients who underwent stereotactic body radiotherapy (SBRT) and 14 test-retest datasets of non-small cell lung cancer (NSCLC), 1170 radiomic features (shape: n = 16, statistics: n = 32, texture: n = 1122) were extracted. A concordance correlation coefficient (CCC) > 0.85 was used to select robust features. We compared the robust features in various 4D-CT group with those in test-retest. The total number of robust features was a range between 846/1170 (72%) and 970/1170 (83%) in all 4D-CT groups with three breathing phases (40%-60%); however, that was a range between 44/1170 (4%) and 476/1170 (41%) in all 4D-CT groups with 10 breathing phases. In test-retest, the total number of robust features was 967/1170 (83%); thus, the number of robust features in 4D-CT was almost equal to that in test-retest by using 40-60% breathing phases. In 4D-CT, respiratory motion is a factor that greatly affects the robustness of features, thus by using only 40-60% breathing phases, excessive dimension reduction will be able to be prevented in any 4D-CT datasets, and select robust features suitable for CT protocol of your own facility.

摘要

在放射组学分析中,稳健的特征选择通常使用 RIDER 测试-重测数据集来实现。然而,设施和测试-重测数据集之间的 CT 协议是不同的。因此,我们研究了使用来自接受放射治疗的患者的胸部四维 CT(4D-CT)扫描选择稳健特征的可能性。在接受立体定向体放射治疗(SBRT)的 14 例肺癌患者的 4D-CT 数据集和 14 例非小细胞肺癌(NSCLC)的测试-重测数据集,提取了 1170 个放射组学特征(形状:n=16,统计:n=32,纹理:n=1122)。使用一致性相关系数(CCC)>0.85 选择稳健特征。我们比较了各种 4D-CT 组与测试-重测组中的稳健特征。在所有具有三个呼吸阶段(40%-60%)的 4D-CT 组中,稳健特征的总数在 846/1170(72%)到 970/1170(83%)之间;然而,在所有具有 10 个呼吸阶段的 4D-CT 组中,稳健特征的总数在 44/1170(4%)到 476/1170(41%)之间。在测试-重测中,稳健特征的总数为 967/1170(83%);因此,通过使用 40-60%的呼吸阶段,4D-CT 中的稳健特征数量几乎与测试-重测中的特征数量相等。在 4D-CT 中,呼吸运动是极大影响特征稳健性的因素,因此通过仅使用 40-60%的呼吸阶段,可以防止在任何 4D-CT 数据集中过度降维,并选择适合您自己设施 CT 协议的稳健特征。

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引用本文的文献

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Optimising use of 4D-CT phase information for radiomics analysis in lung cancer patients treated with stereotactic body radiotherapy.优化 4D-CT 相位信息在立体定向体部放疗治疗肺癌患者的放射组学分析中的应用。
Phys Med Biol. 2021 May 24;66(11):115012. doi: 10.1088/1361-6560/abfa34.
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Understanding Sources of Variation to Improve the Reproducibility of Radiomics.
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Front Oncol. 2021 Mar 29;11:633176. doi: 10.3389/fonc.2021.633176. eCollection 2021.
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Radiomics feature robustness as measured using an MRI phantom.基于 MRI 体模评估的放射组学特征稳健性。
Sci Rep. 2021 Feb 17;11(1):3973. doi: 10.1038/s41598-021-83593-3.
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Insights Imaging. 2020 Aug 12;11(1):91. doi: 10.1186/s13244-020-00887-2.
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