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印度南极科考队员唾液微生物群的多样性及功能分析

Diversity and functional analysis of salivary microflora of Indian Antarctic expeditionaries.

作者信息

Bhushan Brij, Yadav A P, Singh S B, Ganju L

机构信息

Defence Research and Development Organization (DRDO), Defence Institute of Physiology and Allied Sciences (DIPAS), New Delhi, India.

出版信息

J Oral Microbiol. 2019 Feb 27;11(1):1581513. doi: 10.1080/20002297.2019.1581513. eCollection 2019.

Abstract

: The human oral microbiota continues to change phenotype by many factors (environment, diet, genetics, stress, etc.), throughout life with a major impact on human physiology, psychology, metabolism and immune system. Amongst one such factor with unique and extreme environmental conditions is Antarctica. The sea voyage to Antarctica has many risks than at station for expedition members. In this study, we investigated the influence of Antarctic sea voyage and stay at the Indian Antarctic station Maitri, on the health of Indian expedition members by using a metagenomic approach to explore oral biodiversity. : Saliva samples were collected from 12 expedition members, at 3 different time points viz. before the start of the ship voyage, after the completion of the voyage and at the end of the stay at Antarctica. Samples were analyzed for whole genome and 16S rRNA sequencing. : The oral microbial diversity of the expedition members was significantly changed, during the days of sailing and after the stay at Antarctica. The oral microbiota comprised mainly of the phyla Firmicutes (46%, 29% & 36%); Proteobacteria (40%, 48%, & 44%), Bacteroidetes (10%, 22%, &14%), Fusobacterium and Actinobacteria (5%-1%) and Unclassified (17%, 25% & 23%), at three time points, respectively. Further, the differential analysis of microbes across all the phyla revealed 89, 157 and 157 OTUs genera. The altered microbiota indicated changes in amino acid, lipid and carbohydrate metabolism. : Study suggests that understanding the compositional and functional differences in the oral microbiota of Antarctic expedition members, can lay the foundation to relate these differences to their health status. It will further demonstrate the need for providing improved management during ship voyage and stay in Antarctica.

摘要

人类口腔微生物群会因许多因素(环境、饮食、遗传、压力等)在一生中持续改变其表型,对人类生理、心理、新陈代谢和免疫系统产生重大影响。南极洲就是其中一个具有独特且极端环境条件的因素。对探险队员来说,前往南极洲的海上航行比在科考站面临更多风险。在本研究中,我们采用宏基因组学方法探索口腔生物多样性,调查了南极海上航行以及在印度南极科考站麦特里停留对印度探险队员健康的影响。

从12名探险队员身上在3个不同时间点采集唾液样本,即:启航前、航行结束后以及在南极洲停留结束时。对样本进行全基因组和16S rRNA测序分析。

在航行期间以及在南极洲停留后,探险队员的口腔微生物多样性发生了显著变化。在三个时间点,口腔微生物群主要分别由厚壁菌门(46%、29%和36%)、变形菌门(40%、48%和44%)、拟杆菌门(10%、22%和14%)、梭杆菌属和放线菌门(5%-1%)以及未分类菌群(17%、25%和23%)组成。此外,对所有门的微生物进行差异分析,发现了89、157和157个OTU属。微生物群的改变表明氨基酸、脂质和碳水化合物代谢发生了变化。

研究表明,了解南极探险队员口腔微生物群的组成和功能差异,可为将这些差异与他们的健康状况联系起来奠定基础。这还将进一步证明在海上航行和在南极洲停留期间提供更好管理的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8f/6394331/1da3094c0fe6/ZJOM_A_1581513_F0001_OC.jpg

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