Department of Ecology and Evolution, Princeton University, Princeton, United States.
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, United States.
Elife. 2019 Mar 5;8:e40538. doi: 10.7554/eLife.40538.
Correlation among traits is a fundamental feature of biological systems that remains difficult to study. To address this problem, we developed a flexible approach that allows us to identify factors associated with inter-individual variation in correlation. We use data from three human cohorts to study the effects of genetic and environmental variation on correlations among mRNA transcripts and among NMR metabolites. We first show that environmental exposures (infection and disease) lead to a systematic loss of correlation, which we define as 'decoherence'. Using longitudinal data, we show that decoherent metabolites are better predictors of whether someone will develop metabolic syndrome than metabolites commonly used as biomarkers of this disease. Finally, we demonstrate that correlation itself is under genetic control by mapping hundreds of 'correlation quantitative trait loci (QTLs)'. Together, this work furthers our understanding of how and why coordinated biological processes break down, and points to a potential role for decoherence in disease.
This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).
性状相关性是生物系统的一个基本特征,但其仍然难以研究。为了解决这个问题,我们开发了一种灵活的方法,使我们能够识别与个体间相关性变化相关的因素。我们使用来自三个人类队列的数据来研究遗传和环境变异对 mRNA 转录本之间以及 NMR 代谢物之间相关性的影响。我们首先表明,环境暴露(感染和疾病)导致相关性的系统性丧失,我们将其定义为“去相干”。使用纵向数据,我们表明去相干代谢物比通常用作该疾病生物标志物的代谢物更好地预测某人是否会发展为代谢综合征。最后,我们通过映射数百个“相关数量性状基因座 (QTL)”证明了相关性本身受到遗传控制。总的来说,这项工作增进了我们对协调的生物过程如何以及为什么会崩溃的理解,并指出去相干在疾病中的潜在作用。
本文经过编辑过程,作者决定如何回应同行评审中提出的问题。审稿人的评估是所有问题都已得到解决(见评审意见信)。