Suppr超能文献

代谢动力学建模为复杂的生物学问题提供了深入了解的机会,但仍存在障碍。

Metabolic kinetic modeling provides insight into complex biological questions, but hurdles remain.

机构信息

Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA; Center for Synthetic Biology, Northwestern University, Evanston, IL, USA.

Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.

出版信息

Curr Opin Biotechnol. 2019 Oct;59:24-30. doi: 10.1016/j.copbio.2019.02.005. Epub 2019 Mar 7.

Abstract

Metabolic models containing kinetic information can answer unique questions about cellular metabolism that are useful to metabolic engineering. Several kinetic modeling frameworks have recently been developed or improved. In addition, techniques for systematic identification of model structure, including regulatory interactions, have been reported. Each framework has advantages and limitations, which can make it difficult to choose the most appropriate framework. Common limitations are data availability and computational time, especially in large-scale modeling efforts. However, recently developed experimental techniques, parameter identification algorithms, as well as model reduction techniques help alleviate these computational bottlenecks. Opportunities for additional improvements may come from the rich literature in catalysis and chemical networks. In all, kinetic models are positioned to make significant impact in cellular engineering.

摘要

包含动力学信息的代谢模型可以回答有关细胞代谢的独特问题,这对代谢工程很有用。最近已经开发或改进了几种动力学建模框架。此外,还报道了用于系统识别模型结构(包括调节相互作用)的技术。每个框架都有其优点和局限性,这可能使得很难选择最合适的框架。常见的限制是数据可用性和计算时间,特别是在大规模建模工作中。然而,最近开发的实验技术、参数识别算法以及模型简化技术有助于缓解这些计算瓶颈。从催化和化学网络的丰富文献中,可能会有进一步改进的机会。总之,动力学模型有望在细胞工程中产生重大影响。

相似文献

3
Kinetic modeling of cell metabolism for microbial production.用于微生物生产的细胞代谢动力学建模
J Biotechnol. 2016 Feb 10;219:126-41. doi: 10.1016/j.jbiotec.2015.12.023. Epub 2015 Dec 24.
6
Improving prediction fidelity of cellular metabolism with kinetic descriptions.用动力学描述提高细胞代谢的预测准确性。
Curr Opin Biotechnol. 2015 Dec;36:57-64. doi: 10.1016/j.copbio.2015.08.011. Epub 2015 Aug 28.
9

引用本文的文献

10
Metabolomics and modelling approaches for systems metabolic engineering.用于系统代谢工程的代谢组学和建模方法。
Metab Eng Commun. 2022 Oct 15;15:e00209. doi: 10.1016/j.mec.2022.e00209. eCollection 2022 Dec.

本文引用的文献

2
A portable structural analysis library for reaction networks.一个用于反应网络的便携式结构分析库。
Biosystems. 2018 Jul;169-170:20-25. doi: 10.1016/j.biosystems.2018.05.008. Epub 2018 May 30.
3
A review of computational tools for design and reconstruction of metabolic pathways.代谢途径设计与重建的计算工具综述。
Synth Syst Biotechnol. 2017 Nov 15;2(4):243-252. doi: 10.1016/j.synbio.2017.11.002. eCollection 2017 Dec.
6
RetroPath2.0: A retrosynthesis workflow for metabolic engineers.RetroPath2.0:代谢工程师的反合成工作流程。
Metab Eng. 2018 Jan;45:158-170. doi: 10.1016/j.ymben.2017.12.002. Epub 2017 Dec 9.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验