Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA; Center for Synthetic Biology, Northwestern University, Evanston, IL, USA.
Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, USA.
Curr Opin Biotechnol. 2019 Oct;59:24-30. doi: 10.1016/j.copbio.2019.02.005. Epub 2019 Mar 7.
Metabolic models containing kinetic information can answer unique questions about cellular metabolism that are useful to metabolic engineering. Several kinetic modeling frameworks have recently been developed or improved. In addition, techniques for systematic identification of model structure, including regulatory interactions, have been reported. Each framework has advantages and limitations, which can make it difficult to choose the most appropriate framework. Common limitations are data availability and computational time, especially in large-scale modeling efforts. However, recently developed experimental techniques, parameter identification algorithms, as well as model reduction techniques help alleviate these computational bottlenecks. Opportunities for additional improvements may come from the rich literature in catalysis and chemical networks. In all, kinetic models are positioned to make significant impact in cellular engineering.
包含动力学信息的代谢模型可以回答有关细胞代谢的独特问题,这对代谢工程很有用。最近已经开发或改进了几种动力学建模框架。此外,还报道了用于系统识别模型结构(包括调节相互作用)的技术。每个框架都有其优点和局限性,这可能使得很难选择最合适的框架。常见的限制是数据可用性和计算时间,特别是在大规模建模工作中。然而,最近开发的实验技术、参数识别算法以及模型简化技术有助于缓解这些计算瓶颈。从催化和化学网络的丰富文献中,可能会有进一步改进的机会。总之,动力学模型有望在细胞工程中产生重大影响。