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本文引用的文献

1
A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.
NPJ Syst Biol Appl. 2018 May 29;4:19. doi: 10.1038/s41540-018-0054-3. eCollection 2018.
2
A portable structural analysis library for reaction networks.
Biosystems. 2018 Jul;169-170:20-25. doi: 10.1016/j.biosystems.2018.05.008. Epub 2018 May 30.
3
A review of computational tools for design and reconstruction of metabolic pathways.
Synth Syst Biotechnol. 2017 Nov 15;2(4):243-252. doi: 10.1016/j.synbio.2017.11.002. eCollection 2017 Dec.
4
Pathway design using de novo steps through uncharted biochemical spaces.
Nat Commun. 2018 Jan 12;9(1):184. doi: 10.1038/s41467-017-02362-x.
5
A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication.
Cell. 2018 Jan 11;172(1-2):358-372.e23. doi: 10.1016/j.cell.2017.12.006. Epub 2018 Jan 4.
6
RetroPath2.0: A retrosynthesis workflow for metabolic engineers.
Metab Eng. 2018 Jan;45:158-170. doi: 10.1016/j.ymben.2017.12.002. Epub 2017 Dec 9.
7
Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks.
Biotechnol Adv. 2017 Dec;35(8):981-1003. doi: 10.1016/j.biotechadv.2017.09.005. Epub 2017 Sep 13.
8
Acceleration Strategies to Enhance Metabolic Ensemble Modeling Performance.
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9
redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.
PLoS Comput Biol. 2017 Jul 20;13(7):e1005444. doi: 10.1371/journal.pcbi.1005444. eCollection 2017 Jul.
10
Methods of Model Reduction for Large-Scale Biological Systems: A Survey of Current Methods and Trends.
Bull Math Biol. 2017 Jul;79(7):1449-1486. doi: 10.1007/s11538-017-0277-2. Epub 2017 Jun 27.

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