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DNA 双链断裂的顺式染色质反应概述。

A Snapshot on the Cis Chromatin Response to DNA Double-Strand Breaks.

机构信息

LBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse, France.

LBCMCP, Centre de Biologie Integrative (CBI), CNRS, Université de Toulouse, UT3, Toulouse, France.

出版信息

Trends Genet. 2019 May;35(5):330-345. doi: 10.1016/j.tig.2019.02.003. Epub 2019 Mar 18.

Abstract

In eukaryotes, detection and repair of DNA double-strand breaks (DSBs) operate within chromatin, an incredibly complex structure that tightly packages and regulates DNA metabolism. Chromatin participates in the repair of these lesions at multiple steps, from detection to genomic sequence recovery and chromatin is itself extensively modified during the repair process. In recent years, new methodologies and dedicated techniques have expanded the experimental toolbox, opening up a new era granting the high-resolution analysis of chromatin modifications at annotated DSBs in a genome-wide manner. A complex picture is starting to emerge whereby chromatin is altered at various scales around DSBs, in a manner that relates to the repair pathway used, hence defining a 'repair histone code'. Here, we review the recent advances regarding our knowledge of the chromatin landscape induced in cis around DSBs, with an emphasis on histone post-translational modifications and histone variants.

摘要

在真核生物中,DNA 双链断裂 (DSB) 的检测和修复是在染色质中进行的,染色质是一种极其复杂的结构,它可以紧密地包装和调节 DNA 代谢。染色质在多个步骤中参与这些损伤的修复,从检测到基因组序列恢复,并且在修复过程中染色质本身会被广泛修饰。近年来,新的方法和专门的技术扩展了实验工具箱,开创了一个新的时代,使得以全基因组的方式对注释的 DSB 处的染色质修饰进行高分辨率分析成为可能。一个复杂的画面开始浮现,即 DSB 周围的染色质在不同的尺度上发生改变,这种改变与所使用的修复途径有关,因此定义了一个“修复组蛋白密码”。在这里,我们回顾了关于 DSB 附近顺式诱导的染色质景观的最新进展,重点介绍了组蛋白翻译后修饰和组蛋白变体。

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