Ko Wooseok, Kumar Rahul, Kim Sanggil, Lee Hyun Soo
Department of Chemistry , Sogang University , Seoul 121-742 , Republic of Korea.
ACS Synth Biol. 2019 May 17;8(5):1195-1203. doi: 10.1021/acssynbio.9b00076. Epub 2019 Apr 16.
Engineered organisms with an expanded genetic code have attracted much attention in chemical and synthetic biology research. In this work, engineered bacterial organisms with enhanced unnatural amino acid (UAA) uptake abilities were developed by screening periplasmic binding protein (PBP) mutants for recognition of UAAs. A FRET-based assay was used to identify a mutant PBP (LBP-AEL) with excellent binding affinity ( K ≈ 500 nM) to multiple UAAs from 37 mutants. Bacterial cells expressing LBP-AEL showed up to 5-fold enhanced uptake of UAAs, which was determined by genetic incorporation of UAAs into a green fluorescent protein and measuring UAA concentration in cell lysates. To the best of our knowledge, this work is the first report of engineering cellular uptake of UAAs and could provide an impetus for designing advanced unnatural organisms with an expanded genetic code, which function with the efficiency comparable to that of natural organisms. The system would be useful to increase mutant protein yield from lower concentrations of UAAs for industrial and large-scale applications. In addition, the techniques used in this report such as the sensor design and the measurement of UAA concentration in cell lysates could be useful for other biochemical applications.
具有扩展遗传密码的工程生物体在化学和合成生物学研究中备受关注。在这项工作中,通过筛选周质结合蛋白(PBP)突变体以识别非天然氨基酸(UAA),开发出了具有增强非天然氨基酸摄取能力的工程细菌生物体。基于荧光共振能量转移(FRET)的检测方法用于从37个突变体中鉴定出对多种非天然氨基酸具有优异结合亲和力(K≈500 nM)的突变型PBP(LBP-AEL)。表达LBP-AEL的细菌细胞对非天然氨基酸的摄取能力提高了5倍,这是通过将非天然氨基酸基因掺入绿色荧光蛋白并测量细胞裂解物中的非天然氨基酸浓度来确定的。据我们所知,这项工作是关于工程化细胞摄取非天然氨基酸的首次报道,可为设计具有扩展遗传密码的先进非天然生物体提供动力,这些生物体的功能效率与天然生物体相当。该系统将有助于从较低浓度的非天然氨基酸提高突变蛋白产量,以用于工业和大规模应用。此外,本报告中使用的技术,如传感器设计和细胞裂解物中非天然氨基酸浓度的测量,可能对其他生化应用有用。