• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

真核核糖体肽天然产物的发现和生物合成研究的最新进展。

Recent Advances in the Discovery and Biosynthetic Study of Eukaryotic RiPP Natural Products.

机构信息

State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China.

出版信息

Molecules. 2019 Apr 18;24(8):1541. doi: 10.3390/molecules24081541.

DOI:10.3390/molecules24081541
PMID:31003555
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6514808/
Abstract

Natural products have played indispensable roles in drug development and biomedical research. Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a group of fast-expanding natural products attribute to genome mining efforts in recent years. Most RiPP natural products were discovered from bacteria, yet many eukaryotic cyclic peptides turned out to be of RiPP origin. This review article presents recent advances in the discovery of eukaryotic RiPP natural products, the elucidation of their biosynthetic pathways, and the molecular basis for their biosynthetic enzyme catalysis.

摘要

天然产物在药物开发和生物医学研究中发挥了不可或缺的作用。核糖体合成和翻译后修饰肽(RiPPs)是近年来通过基因组挖掘发现的一组快速增长的天然产物。大多数 RiPP 天然产物是从细菌中发现的,但许多真核环肽也被证明是 RiPP 的起源。本文综述了真核 RiPP 天然产物的发现、生物合成途径的阐明以及生物合成酶催化的分子基础的最新进展。

相似文献

1
Recent Advances in the Discovery and Biosynthetic Study of Eukaryotic RiPP Natural Products.真核核糖体肽天然产物的发现和生物合成研究的最新进展。
Molecules. 2019 Apr 18;24(8):1541. doi: 10.3390/molecules24081541.
2
New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.核糖体合成和翻译后修饰肽天然产物生物合成逻辑的新见解。
Cell Chem Biol. 2016 Jan 21;23(1):31-44. doi: 10.1016/j.chembiol.2015.11.012.
3
Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era.基因组时代核糖体合成及翻译后修饰肽类天然产物的发现
Curr Opin Chem Biol. 2017 Jun;38:36-44. doi: 10.1016/j.cbpa.2017.02.005. Epub 2017 Mar 2.
4
Ribosomally synthesized and post-translationally modified peptide natural products: new insights into the role of leader and core peptides during biosynthesis.核糖体合成和翻译后修饰的肽类天然产物:在生物合成过程中领导者和核心肽的作用的新见解。
Chemistry. 2013 Jun 10;19(24):7662-77. doi: 10.1002/chem.201300401. Epub 2013 May 10.
5
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining.核糖体合成的天然产物化学空间的基因组图谱绘制有助于靶向挖掘。
Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6343-E6351. doi: 10.1073/pnas.1609014113. Epub 2016 Oct 3.
6
Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria.厌氧细菌中核糖体合成及翻译后修饰肽(RiPPs)的基因组挖掘。
BMC Genomics. 2014 Nov 18;15(1):983. doi: 10.1186/1471-2164-15-983.
7
Discovery of novel fungal RiPP biosynthetic pathways and their application for the development of peptide therapeutics.发现新型真菌 RiPP 生物合成途径及其在肽类治疗药物开发中的应用。
Appl Microbiol Biotechnol. 2019 Jul;103(14):5567-5581. doi: 10.1007/s00253-019-09893-x. Epub 2019 May 31.
8
A prevalent peptide-binding domain guides ribosomal natural product biosynthesis.一种普遍存在的肽结合结构域指导核糖体天然产物生物合成。
Nat Chem Biol. 2015 Aug;11(8):564-70. doi: 10.1038/nchembio.1856. Epub 2015 Jul 13.
9
Engineering of RiPP pathways for the production of artificial peptides bearing various non-proteinogenic structures.通过工程化 RiPP 途径生产带有各种非天然结构的人工肽。
Curr Opin Chem Biol. 2018 Oct;46:82-90. doi: 10.1016/j.cbpa.2018.06.014. Epub 2018 Jun 26.
10
Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides.通过整合泛基因组学和机器学习来扩展 RiPP 生物合成空间,揭示了一类新型的硫肽。
PLoS Biol. 2020 Dec 22;18(12):e3001026. doi: 10.1371/journal.pbio.3001026. eCollection 2020 Dec.

引用本文的文献

1
The emergence and loss of cyclic peptides in illuminate dynamics and mechanisms of plant metabolic evolution.环肽的出现与消失揭示了植物代谢进化的动态过程和机制。
Proc Natl Acad Sci U S A. 2025 Apr 22;122(16):e2425055122. doi: 10.1073/pnas.2425055122. Epub 2025 Apr 14.
2
In Silico Screening of Bacteriocin Gene Clusters within a Set of Marine Genomes.一组海洋基因组中细菌素基因簇的计算机筛选
Int J Mol Sci. 2024 Feb 22;25(5):2566. doi: 10.3390/ijms25052566.
3
Proteases Involved in Leader Peptide Removal during RiPP Biosynthesis.

本文引用的文献

1
The macrocyclizing protease butelase 1 remains autocatalytic and reveals the structural basis for ligase activity.大环化蛋白酶 butelase 1 保持自我催化,并揭示了连接酶活性的结构基础。
Plant J. 2019 Jun;98(6):988-999. doi: 10.1111/tpj.14293. Epub 2019 Mar 28.
2
The MSDIN family in amanitin-producing mushrooms and evolution of the prolyl oligopeptidase genes.产鹅膏菌素蘑菇中的MSDIN家族与脯氨酰寡肽酶基因的进化。
IMA Fungus. 2018 Jul;9:225-242. doi: 10.5598/imafungus.2018.09.02.01. Epub 2018 Aug 1.
3
Heterologous production of asperipin-2a: proposal for sequential oxidative macrocyclization by a fungi-specific DUF3328 oxidase.
核糖体合成的天然产物生物合成过程中参与前导肽去除的蛋白酶
ACS Bio Med Chem Au. 2023 Dec 13;4(1):20-36. doi: 10.1021/acsbiomedchemau.3c00059. eCollection 2024 Feb 21.
4
Disulfide bridge-targeted metabolome mining unravels an antiparkinsonian peptide.二硫键靶向代谢组挖掘揭示了一种抗帕金森病肽。
Acta Pharm Sin B. 2024 Feb;14(2):881-892. doi: 10.1016/j.apsb.2023.09.006. Epub 2023 Sep 19.
5
Characterization of the Biosynthetic Gene Cluster for the Ribosomally Synthesized Cyclic Peptide Epichloëcyclins in .内生真菌 Epichloë 中环肽 Epichloëcyclins 的生物合成基因簇的特性研究。
J Agric Food Chem. 2023 Sep 27;71(38):13965-13978. doi: 10.1021/acs.jafc.3c03073. Epub 2023 Sep 13.
6
Sequence controlled secondary structure is important for the site-selectivity of lanthipeptide cyclization.序列控制的二级结构对羊毛硫肽环化的位点选择性很重要。
Chem Sci. 2023 May 9;14(25):6904-6914. doi: 10.1039/d2sc06546k. eCollection 2023 Jun 28.
7
Cytochromes P450 involved in bacterial RiPP biosyntheses.细胞色素 P450 参与细菌 RiPP 生物合成。
J Ind Microbiol Biotechnol. 2023 Feb 17;50(1). doi: 10.1093/jimb/kuad005.
8
Marine Bacterial Ribosomal Peptides: Recent Genomics- and Synthetic Biology-Based Discoveries and Biosynthetic Studies.海洋细菌核糖体肽:基于基因组学和合成生物学的最新发现和生物合成研究。
Mar Drugs. 2022 Aug 24;20(9):544. doi: 10.3390/md20090544.
9
Exploring fungal RiPPs from the perspective of chemical ecology.从化学生态学角度探索真菌核糖体合成和翻译后修饰肽
Fungal Biol Biotechnol. 2022 Jun 25;9(1):12. doi: 10.1186/s40694-022-00144-9.
10
FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution.功能订单:一种通过计算分子共进化来鉴定必需生物合成基因的强大且半自动的方法。
PLoS Comput Biol. 2021 Sep 27;17(9):e1009372. doi: 10.1371/journal.pcbi.1009372. eCollection 2021 Sep.
曲霉二酮哌嗪-2a 的异源生产:真菌特异性 DUF3328 氧化酶进行顺序氧化大环化的建议。
Org Biomol Chem. 2018 Dec 19;17(1):39-43. doi: 10.1039/c8ob02824a.
4
One-Pot Dual Labeling of IgG 1 and Preparation of C-to-C Fusion Proteins Through a Combination of Sortase A and Butelase 1.通过 Sortase A 和 Butelase 1 的组合进行 IgG1 的一锅双标记和 C-C 融合蛋白的制备。
Bioconjug Chem. 2018 Oct 17;29(10):3245-3249. doi: 10.1021/acs.bioconjchem.8b00563. Epub 2018 Sep 21.
5
Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis.在 RiPP 天然产物生物合成中自动催化骨架 N-甲基化的分子基础。
ACS Chem Biol. 2018 Oct 19;13(10):2989-2999. doi: 10.1021/acschembio.8b00668. Epub 2018 Sep 25.
6
A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.一种酶促将肽键内氮原子甲基化的分子机制。
Sci Adv. 2018 Aug 24;4(8):eaat2720. doi: 10.1126/sciadv.aat2720. eCollection 2018 Aug.
7
The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis.蓝细菌素生物合成途径的生物化学与结构生物学:助力组合生物合成
Methods Enzymol. 2018;604:113-163. doi: 10.1016/bs.mie.2018.03.002. Epub 2018 May 4.
8
Bioactive Compounds Isolated from Neglected Predatory Marine Gastropods.从被忽视的掠食性海洋腹足纲软体动物中分离得到的生物活性化合物。
Mar Drugs. 2018 Apr 5;16(4):118. doi: 10.3390/md16040118.
9
Biosynthetic Proteases That Catalyze the Macrocyclization of Ribosomally Synthesized Linear Peptides.催化核糖体合成的线性肽大环化的生物合成蛋白酶。
Biochemistry. 2018 Jun 12;57(23):3201-3209. doi: 10.1021/acs.biochem.8b00114. Epub 2018 Mar 27.
10
RiPP antibiotics: biosynthesis and engineering potential.核糖体肽类抗生素:生物合成与工程潜力。
Curr Opin Microbiol. 2018 Oct;45:61-69. doi: 10.1016/j.mib.2018.02.010. Epub 2018 Mar 10.