• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

蓝细菌素生物合成途径的生物化学与结构生物学:助力组合生物合成

The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis.

作者信息

Gu Wenjia, Dong Shi-Hui, Sarkar Snigdha, Nair Satish K, Schmidt Eric W

机构信息

Department of Medicinal Chemistry, University of Utah, Salt Lake City, UT, United States.

Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, United States.

出版信息

Methods Enzymol. 2018;604:113-163. doi: 10.1016/bs.mie.2018.03.002. Epub 2018 May 4.

DOI:10.1016/bs.mie.2018.03.002
PMID:29779651
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6463883/
Abstract

Cyanobactin biosynthetic enzymes have exceptional versatility in the synthesis of natural and unnatural products. Cyanobactins are ribosomally synthesized and posttranslationally modified peptides synthesized by multistep pathways involving a broad suite of enzymes, including heterocyclases/cyclodehydratases, macrocyclases, proteases, prenyltransferases, methyltransferases, and others. Here, we describe the enzymology and structural biology of cyanobactin biosynthetic enzymes, aiming at the twin goals of understanding biochemical mechanisms and biosynthetic plasticity. We highlight how this common suite of enzymes may be utilized to generate a large array or structurally and chemically diverse compounds.

摘要

蓝细菌素生物合成酶在天然和非天然产物的合成中具有非凡的通用性。蓝细菌素是通过多步途径进行核糖体合成和翻译后修饰的肽,这些途径涉及一系列广泛的酶,包括杂环化酶/环脱水酶、大环化酶、蛋白酶、异戊烯基转移酶、甲基转移酶等。在此,我们描述蓝细菌素生物合成酶的酶学和结构生物学,旨在实现理解生化机制和生物合成可塑性这两个目标。我们强调了如何利用这套常见的酶来生成大量结构和化学性质多样的化合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/31778570b5a6/nihms-1018813-f0016.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/6507cca7a4d2/nihms-1018813-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/1dcfc7db8678/nihms-1018813-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/6a4026ac66b5/nihms-1018813-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/92fad0bc1f45/nihms-1018813-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/e0f9ba90d792/nihms-1018813-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/e809e27852f3/nihms-1018813-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/1ca70b4377b0/nihms-1018813-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/28802dd9bc18/nihms-1018813-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/8f4e93e2be8b/nihms-1018813-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/059ea63d1c72/nihms-1018813-f0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/4ce24171d291/nihms-1018813-f0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/4a3a6ad76b08/nihms-1018813-f0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/ec8e347e0bcd/nihms-1018813-f0013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/9dc15c0b8695/nihms-1018813-f0014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/3dbcadbc7175/nihms-1018813-f0015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/31778570b5a6/nihms-1018813-f0016.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/6507cca7a4d2/nihms-1018813-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/1dcfc7db8678/nihms-1018813-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/6a4026ac66b5/nihms-1018813-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/92fad0bc1f45/nihms-1018813-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/e0f9ba90d792/nihms-1018813-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/e809e27852f3/nihms-1018813-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/1ca70b4377b0/nihms-1018813-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/28802dd9bc18/nihms-1018813-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/8f4e93e2be8b/nihms-1018813-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/059ea63d1c72/nihms-1018813-f0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/4ce24171d291/nihms-1018813-f0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/4a3a6ad76b08/nihms-1018813-f0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/ec8e347e0bcd/nihms-1018813-f0013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/9dc15c0b8695/nihms-1018813-f0014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/3dbcadbc7175/nihms-1018813-f0015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d91c/6463883/31778570b5a6/nihms-1018813-f0016.jpg

相似文献

1
The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis.蓝细菌素生物合成途径的生物化学与结构生物学:助力组合生物合成
Methods Enzymol. 2018;604:113-163. doi: 10.1016/bs.mie.2018.03.002. Epub 2018 May 4.
2
Directing Biosynthesis: Practical Supply of Natural and Unnatural Cyanobactins.指导生物合成:天然和非天然蓝细菌素的实际供应
Methods Enzymol. 2016;575:1-20. doi: 10.1016/bs.mie.2016.02.012. Epub 2016 Mar 16.
3
Genome-Mining-Based Discovery of the Cyclic Peptide Tolypamide and TolF, a Ser/Thr Forward O-Prenyltransferase.基于基因组挖掘的环状肽托利酰胺和 TolF 的发现,一种 Ser/Thr 正向 O-异戊烯基转移酶。
Angew Chem Int Ed Engl. 2021 Apr 6;60(15):8460-8465. doi: 10.1002/anie.202015975. Epub 2021 Mar 5.
4
Three Principles of Diversity-Generating Biosynthesis.多样性生成生物合成的三个原则。
Acc Chem Res. 2017 Oct 17;50(10):2569-2576. doi: 10.1021/acs.accounts.7b00330. Epub 2017 Sep 11.
5
Roads to Rome: Role of Multiple Cassettes in Cyanobactin RiPP Biosynthesis.通往罗马之路:多盒结构域在蓝细菌素 RiPP 生物合成中的作用。
J Am Chem Soc. 2018 Nov 28;140(47):16213-16221. doi: 10.1021/jacs.8b09328. Epub 2018 Nov 14.
6
N-Prenylation of Tryptophan by an Aromatic Prenyltransferase from the Cyanobactin Biosynthetic Pathway.来自蓝细菌素生物合成途径的芳香族异戊烯基转移酶对色氨酸的N-异戊烯基化作用。
Biochemistry. 2018 Dec 18;57(50):6860-6867. doi: 10.1021/acs.biochem.8b00879. Epub 2018 Dec 3.
7
Discovery, biochemical characterization, and bioengineering of cyanobactin prenyltransferases.蓝细菌素异戊二烯基转移酶的发现、生化特性及生物工程研究
Trends Biochem Sci. 2023 Apr;48(4):360-374. doi: 10.1016/j.tibs.2022.11.002. Epub 2022 Dec 21.
8
Modularity of RiPP Enzymes Enables Designed Synthesis of Decorated Peptides.核糖体合成和翻译后修饰肽(RiPP)酶的模块化特性助力修饰肽的定向合成。
Chem Biol. 2015 Jul 23;22(7):907-16. doi: 10.1016/j.chembiol.2015.06.014. Epub 2015 Jul 9.
9
Biochemical characterization of a cyanobactin arginine--prenylase from the autumnalamide biosynthetic pathway.一种来源于秋水仙碱生物合成途径的蓝细菌素精氨酸- prenylase 的生化特性分析。
Chem Commun (Camb). 2022 Oct 27;58(86):12054-12057. doi: 10.1039/d2cc01799g.
10
The structural biology of patellamide biosynthesis.帕台酰胺生物合成的结构生物学
Curr Opin Struct Biol. 2014 Dec;29:112-121. doi: 10.1016/j.sbi.2014.10.006. Epub 2014 Nov 25.

引用本文的文献

1
RiPP Enzymes for Biosynthetically Derived Cyclic Peptide Libraries.用于生物合成衍生环肽文库的核糖体合成和翻译后修饰肽酶
Methods Mol Biol. 2025;2934:233-243. doi: 10.1007/978-1-0716-4578-9_16.
2
Aromatic side-chain crosslinking in RiPP biosynthesis.核糖体合成的天然肽中芳香族侧链交联
Nat Chem Biol. 2025 Feb;21(2):168-181. doi: 10.1038/s41589-024-01795-y. Epub 2025 Jan 15.
3
Genome-informed Discovery of Monchicamides A-K: Cyanobactins from the Microcoleaceae Cyanobacterium LEGE 16532.基于基因组信息发现蒙奇酰胺A - K:来自微鞘藻科蓝细菌LEGE 16532的蓝细菌素

本文引用的文献

1
Bypassing the proline/thiazoline requirement of the macrocyclase PatG.绕过大环化酶PatG对脯氨酸/噻唑啉的需求。
Chem Commun (Camb). 2017 Nov 14;53(91):12274-12277. doi: 10.1039/c7cc06550g.
2
Cyclic peptide production using a macrocyclase with enhanced substrate promiscuity and relaxed recognition determinants.使用具有增强的底物混杂性和宽松识别决定因素的大环化酶生产环肽。
Chem Commun (Camb). 2017 Sep 26;53(77):10656-10659. doi: 10.1039/c7cc05913b.
3
Three Principles of Diversity-Generating Biosynthesis.多样性生成生物合成的三个原则。
J Nat Prod. 2025 Jan 24;88(1):86-93. doi: 10.1021/acs.jnatprod.4c01063. Epub 2024 Dec 24.
4
Analysis of the cryptic biosynthetic gene cluster encoding the RiPP curacozole reveals a phenylalanine-specific peptide hydroxylase.对编码RiPP curacozole的神秘生物合成基因簇的分析揭示了一种苯丙氨酸特异性肽羟化酶。
Chem Sci. 2024 Nov 5;15(47):19858-19869. doi: 10.1039/d4sc02262a. eCollection 2024 Dec 4.
5
Ribosomal peptides with polycyclic isoprenoid moieties.带有多环异戊二烯部分的核糖体肽。
Chem. 2024 Oct 10;10(10):3224-3242. doi: 10.1016/j.chempr.2024.07.026. Epub 2024 Sep 6.
6
Genome Mining for New Enzyme Chemistry.用于新酶化学的基因组挖掘
ACS Catal. 2024 Mar 12;14(7):4536-4553. doi: 10.1021/acscatal.3c06322. eCollection 2024 Apr 5.
7
Short macrocyclic peptides in sponge genomes.海绵基因组中的短环肽。
Proc Natl Acad Sci U S A. 2024 Mar 12;121(11):e2314383121. doi: 10.1073/pnas.2314383121. Epub 2024 Mar 5.
8
An Autocatalytic Peptide Cyclase Improves Fidelity and Yield of Circular Peptides In Vivo and In Vitro.自催化肽环化酶提高体内和体外环状肽的保真度和产量。
ACS Synth Biol. 2024 Jan 19;13(1):394-401. doi: 10.1021/acssynbio.3c00645. Epub 2024 Jan 9.
9
Uncovering the diversity and distribution of biosynthetic gene clusters of prochlorosins and other putative RiPPs in marine strains.揭示海洋菌株中 prochlorosins 和其他潜在 RiPPs 的生物合成基因簇的多样性和分布。
Microbiol Spectr. 2024 Jan 11;12(1):e0361123. doi: 10.1128/spectrum.03611-23. Epub 2023 Dec 13.
10
Core-dependent post-translational modifications guide the biosynthesis of a new class of hypermodified peptides.核心依赖性翻译后修饰指导一类新型超修饰肽的生物合成。
Nat Commun. 2023 Nov 25;14(1):7734. doi: 10.1038/s41467-023-43604-5.
Acc Chem Res. 2017 Oct 17;50(10):2569-2576. doi: 10.1021/acs.accounts.7b00330. Epub 2017 Sep 11.
4
Chimeric Leader Peptides for the Generation of Non-Natural Hybrid RiPP Products.用于生成非天然杂交核糖体合成和翻译后修饰肽产物的嵌合前导肽
ACS Cent Sci. 2017 Jun 28;3(6):629-638. doi: 10.1021/acscentsci.7b00141. Epub 2017 Jun 6.
5
A Blind Test of Computational Technique for Predicting the Likelihood of Peptide Sequences to Cyclize.预测肽序列环化可能性的计算技术的盲测
J Phys Chem Lett. 2017 May 18;8(10):2310-2315. doi: 10.1021/acs.jpclett.7b00848. Epub 2017 May 10.
6
Is Cu Coordinated to Patellamides inside Prochloron Cells?铜在原绿藻细胞内是否与髌骨酰胺配位?
Chemistry. 2017 Sep 7;23(50):12264-12274. doi: 10.1002/chem.201700895. Epub 2017 Apr 26.
7
YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function.YcaO 依赖的翻译后酰胺激活:生物合成、结构与功能
Chem Rev. 2017 Apr 26;117(8):5389-5456. doi: 10.1021/acs.chemrev.6b00623. Epub 2017 Mar 3.
8
Enzymatic N- and C-Protection in Cyanobactin RiPP Natural Products.酶法 N-和 C-保护在蓝藻肽 RiPP 天然产物中的应用。
J Am Chem Soc. 2017 Mar 1;139(8):2884-2887. doi: 10.1021/jacs.6b12872. Epub 2017 Feb 15.
9
Synthesis of Hybrid Cyclopeptides through Enzymatic Macrocyclization.通过酶促大环化合成杂合环肽。
ChemistryOpen. 2016 Dec 13;6(1):11-14. doi: 10.1002/open.201600134. eCollection 2017 Feb.
10
Dissection of goadsporin biosynthesis by in vitro reconstitution leading to designer analogues expressed in vivo.通过体外重建揭示促孢菌素生物合成途径,从而获得体内表达的设计类似物。
Nat Commun. 2017 Feb 6;8:14207. doi: 10.1038/ncomms14207.