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模拟基于氧化还原的修饰来调节植物细胞质三磷酸甘油醛异构酶活性的结构基础。

Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox-based modifications.

机构信息

Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del IPN, Apartado Postal 629, Irapuato, Guanajuato, México, CP 36821, México.

Departamento de Bioquímica, Facultad de Medicina, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Apartado Postal 70-243, Mexico City, 04510, México.

出版信息

Plant J. 2019 Sep;99(5):950-964. doi: 10.1111/tpj.14375. Epub 2019 Jun 13.

DOI:10.1111/tpj.14375
PMID:31034710
Abstract

Reactive oxidative species (ROS) and S-glutathionylation modulate the activity of plant cytosolic triosephosphate isomerases (cTPI). Arabidopsis thaliana cTPI (AtcTPI) is subject of redox regulation at two reactive cysteines that function as thiol switches. Here we investigate the role of these residues, AtcTPI-Cys13 and At-Cys218, by substituting them with aspartic acid that mimics the irreversible oxidation of cysteine to sulfinic acid and with amino acids that mimic thiol conjugation. Crystallographic studies show that mimicking AtcTPI-Cys13 oxidation promotes the formation of inactive monomers by reposition residue Phe75 of the neighboring subunit, into a conformation that destabilizes the dimer interface. Mutations in residue AtcTPI-Cys218 to Asp, Lys, or Tyr generate TPI variants with a decreased enzymatic activity by creating structural modifications in two loops (loop 7 and loop 6) whose integrity is necessary to assemble the active site. In contrast with mutations in residue AtcTPI-Cys13, mutations in AtcTPI-Cys218 do not alter the dimeric nature of AtcTPI. Therefore, modifications of residues AtcTPI-Cys13 and AtcTPI-Cys218 modulate AtcTPI activity by inducing the formation of inactive monomers and by altering the active site of the dimeric enzyme, respectively. The identity of residue AtcTPI-Cys218 is conserved in the majority of plant cytosolic TPIs, this conservation and its solvent-exposed localization make it the most probable target for TPI regulation upon oxidative damage by reactive oxygen species. Our data reveal the structural mechanisms by which S-glutathionylation protects AtcTPI from irreversible chemical modifications and re-routes carbon metabolism to the pentose phosphate pathway to decrease oxidative stress.

摘要

活性氧(ROS)和 S-谷胱甘肽化调节植物细胞质三磷酸异磷酸酶(cTPI)的活性。拟南芥 cTPI(AtcTPI)在两个作为硫醇开关起作用的反应性半胱氨酸上受到氧化还原调节。在这里,我们通过用模拟半胱氨酸不可逆氧化为亚磺酸的天冬氨酸以及模拟硫醇结合的氨基酸取代这些残基 AtcTPI-Cys13 和 At-Cys218,研究这些残基的作用。晶体学研究表明,模拟 AtcTPI-Cys13 氧化通过将相邻亚基的残基 Phe75 重新定位到使二聚体界面不稳定的构象,促进无活性单体的形成。残基 AtcTPI-Cys218 突变为 Asp、Lys 或 Tyr 的突变会在两个环(环 7 和环 6)中产生结构修饰,从而降低酶的活性,这些环的完整性对于组装活性位点是必需的。与残基 AtcTPI-Cys13 的突变不同,残基 AtcTPI-Cys218 的突变不会改变 AtcTPI 的二聚体性质。因此,残基 AtcTPI-Cys13 和 AtcTPI-Cys218 的修饰分别通过诱导无活性单体的形成和改变二聚酶的活性部位来调节 AtcTPI 的活性。残基 AtcTPI-Cys218 在大多数植物细胞质 TPI 中是保守的,这种保守性及其溶剂暴露的定位使其成为活性氧引起氧化损伤时 TPI 调节的最可能靶标。我们的数据揭示了 S-谷胱甘肽化保护 AtcTPI 免受不可逆化学修饰以及重新将碳代谢途径重定向到戊糖磷酸途径以减少氧化应激的结构机制。

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