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逆向工程多细胞系统的工具:以果蝇为例的案例研究

Tools to reverse-engineer multicellular systems: case studies using the fruit fly.

作者信息

Wu Qinfeng, Kumar Nilay, Velagala Vijay, Zartman Jeremiah J

机构信息

Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556 USA.

出版信息

J Biol Eng. 2019 Apr 23;13:33. doi: 10.1186/s13036-019-0161-8. eCollection 2019.

DOI:10.1186/s13036-019-0161-8
PMID:31049075
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6480878/
Abstract

Reverse-engineering how complex multicellular systems develop and function is a grand challenge for systems bioengineers. This challenge has motivated the creation of a suite of bioengineering tools to develop increasingly quantitative descriptions of multicellular systems. Here, we survey a selection of these tools including microfluidic devices, imaging and computer vision techniques. We provide a selected overview of the emerging cross-talk between engineering methods and quantitative investigations within developmental biology. In particular, the review highlights selected recent examples from the system, an excellent platform for understanding the interplay between genetics and biophysics. In sum, the integrative approaches that combine multiple advances in these fields are increasingly necessary to enable a deeper understanding of how to analyze both natural and synthetic multicellular systems.

摘要

逆向工程复杂多细胞系统的发育和功能对系统生物工程师来说是一项重大挑战。这一挑战推动了一系列生物工程工具的创建,以对多细胞系统进行越来越定量的描述。在这里,我们概述了其中一些工具,包括微流控设备、成像和计算机视觉技术。我们对工程方法与发育生物学中的定量研究之间新兴的相互作用进行了精选综述。特别是,该综述重点介绍了来自该系统的一些近期实例,该系统是理解遗传学和生物物理学之间相互作用的绝佳平台。总之,结合这些领域的多项进展的综合方法对于更深入地理解如何分析天然和合成多细胞系统越来越必要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/5b649b100f65/13036_2019_161_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/175f2e33a575/13036_2019_161_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/3587165f5d2a/13036_2019_161_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/642db51887e5/13036_2019_161_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/32ff58c6ed58/13036_2019_161_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/5b649b100f65/13036_2019_161_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/175f2e33a575/13036_2019_161_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/3587165f5d2a/13036_2019_161_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/642db51887e5/13036_2019_161_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/32ff58c6ed58/13036_2019_161_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c31d/6480878/5b649b100f65/13036_2019_161_Fig5_HTML.jpg

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2
Microfluidics on the fly: Inexpensive rapid fabrication of thermally laminated microfluidic devices for live imaging and multimodal perturbations of multicellular systems.即时微流控:用于多细胞系统实时成像和多模态扰动的热层压微流控装置的廉价快速制造。
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3
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Nat Commun. 2024 Mar 20;15(1):2477. doi: 10.1038/s41467-024-46698-7.
4
Evolution of Molecular Targeted Cancer Therapy: Mechanisms of Drug Resistance and Novel Opportunities Identified by CRISPR-Cas9 Screening.分子靶向癌症治疗的演变:耐药机制及CRISPR-Cas9筛选发现的新机遇
Front Oncol. 2022 Mar 17;12:755053. doi: 10.3389/fonc.2022.755053. eCollection 2022.
5
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6
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7
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8
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5
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