Sander Kyle, Yeary Meredith, Mahan Kristina, Whitham Jason, Giannone Richard J, Brown Steven D, Rodriguez Miguel, Graham David E, Hankoua Bertrand
Bredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee, Knoxville, TN, USA.
Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN, USA.
AMB Express. 2019 May 4;9(1):59. doi: 10.1186/s13568-019-0783-8.
Genes responsible for the anaerobic catabolism of benzoate in the thermophilic archaeon Ferroglobus placidus were expressed in the thermophilic lignocellulose-degrading bacterium Caldicellulosiruptor bescii, as a first step to engineering this bacterium to degrade this lignin metabolite. The benzoyl-CoA ligase gene was expressed individually, and in combination with benzoyl-CoA reductase and a putative benzoate transporter. This effort also assessed heterologous expression from a synthetically designed operon whereby each coding sequence was proceeded by a unique C. bescii ribosome binding site sequence. The F. placidicus benzoyl-CoA ligase gene was expressed in C. bescii to produce a full-length protein with catalytic activity. A synthetic 6-gene operon encoding three enzymes involved in benzoate degradation was also successfully expressed in C. bescii as determined by RNA analysis, though the protein products of only four of the genes were detected. The discord between the mRNA and protein measurements, especially considering the two genes lacking apparent protein abundance, suggests variable effectiveness of the ribosome binding site sequences utilized in this synthetic operon. The engineered strains did not degrade benzoate. Although the heterologously expressed gene encoding benzoyl-CoA ligase yielded a protein that was catalytically active in vitro, expression in C. bescii of six benzoate catabolism-related genes combined in a synthetic operon yielded mixed results. More effective expression and in vivo activity might be brought about by validating and using different ribosome binding sites and different promoters. Expressing additional pathway components may alleviate any pathway inhibition and enhance benzoyl-CoA reductase activity.
嗜热古菌普拉西德铁球菌中负责苯甲酸厌氧分解代谢的基因,在嗜热木质纤维素降解细菌贝氏热解纤维素菌中进行了表达,这是对该细菌进行工程改造以降解这种木质素代谢物的第一步。苯甲酸辅酶A连接酶基因单独表达,并与苯甲酸辅酶A还原酶和一个假定的苯甲酸转运蛋白一起表达。这项工作还评估了来自人工设计操纵子的异源表达,其中每个编码序列之前都有一个独特的贝氏热解纤维素菌核糖体结合位点序列。普拉西德铁球菌的苯甲酸辅酶A连接酶基因在贝氏热解纤维素菌中表达,产生了具有催化活性的全长蛋白。通过RNA分析确定,一个编码参与苯甲酸降解的三种酶的人工合成6基因操纵子也在贝氏热解纤维素菌中成功表达,不过仅检测到其中四个基因的蛋白质产物。mRNA和蛋白质测量结果之间的不一致,尤其是考虑到两个基因缺乏明显的蛋白质丰度,表明该人工合成操纵子中使用的核糖体结合位点序列的有效性存在差异。工程菌株不能降解苯甲酸。虽然异源表达的编码苯甲酸辅酶A连接酶的基因产生了一种在体外具有催化活性的蛋白质,但在贝氏热解纤维素菌中表达一个人工合成操纵子中组合的六个与苯甲酸分解代谢相关的基因,结果喜忧参半。通过验证和使用不同的核糖体结合位点和不同的启动子,可能会实现更有效的表达和体内活性。表达额外的途径成分可能会缓解任何途径抑制并增强苯甲酸辅酶A还原酶活性。