Complex Systems Laboratory, Center for Computational Biology, Indraprastha Institute of Information Technology (IIIT-Delhi), New Delhi, India.
Sci Rep. 2019 May 9;9(1):7155. doi: 10.1038/s41598-019-43664-y.
The dichotomy of sweet and bitter tastes is a salient evolutionary feature of human gustatory system with an innate attraction to sweet taste and aversion to bitterness. A better understanding of molecular correlates of bitter-sweet taste gradient is crucial for identification of natural as well as synthetic compounds of desirable taste on this axis. While previous studies have advanced our understanding of the molecular basis of bitter-sweet taste and contributed models for their identification, there is ample scope to enhance these models by meticulous compilation of bitter-sweet molecules and utilization of a wide spectrum of molecular descriptors. Towards these goals, our study provides a structured compilation of bitter, sweet and tasteless molecules and state-of-the-art machine learning models for bitter-sweet taste prediction (BitterSweet). We compare different sets of molecular descriptors for their predictive performance and further identify important features as well as feature blocks. The utility of BitterSweet models is demonstrated by taste prediction on large specialized chemical sets such as FlavorDB, FooDB, SuperSweet, Super Natural II, DSSTox, and DrugBank. To facilitate future research in this direction, we make all datasets and BitterSweet models publicly available, and present an end-to-end software for bitter-sweet taste prediction based on freely available chemical descriptors.
甜和苦味道的二分法是人类味觉系统的一个显著进化特征,具有对甜味的先天吸引力和对苦味的厌恶。更好地理解苦甜味道梯度的分子相关性对于确定这个轴线上的天然和合成的理想味道化合物至关重要。虽然以前的研究已经提高了我们对苦甜味道的分子基础的理解,并为其鉴定提供了模型,但通过仔细汇编苦甜分子和利用广泛的分子描述符,这些模型还有很大的改进空间。为了实现这些目标,我们的研究提供了一个结构化的苦、甜和无味分子的汇编,以及用于苦甜味道预测的最新机器学习模型(BitterSweet)。我们比较了不同的分子描述符集的预测性能,并进一步确定了重要的特征和特征块。通过在大型专业化学集(如 FlavorDB、FooDB、SuperSweet、Super Natural II、DSSTox 和 DrugBank)上进行味道预测,展示了 BitterSweet 模型的实用性。为了促进这方面的未来研究,我们公开了所有数据集和 BitterSweet 模型,并提供了一个基于免费化学描述符的端到端的苦甜味道预测软件。