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本文引用的文献

1
The Type VI secretion system: a versatile bacterial weapon.VI 型分泌系统：一种多功能的细菌武器。
Microbiology (Reading). 2019 May;165(5):503-515. doi: 10.1099/mic.0.000789. Epub 2019 Mar 20.
2
Bacterial symbionts use a type VI secretion system to eliminate competitors in their natural host.细菌共生体利用一种类型的 VI 型分泌系统来消除其自然宿主中的竞争者。
Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8528-E8537. doi: 10.1073/pnas.1808302115. Epub 2018 Aug 20.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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Intraspecific Competition Impacts Vibrio fischeri Strain Diversity during Initial Colonization of the Squid Light Organ.种内竞争影响费氏弧菌在鱿鱼发光器官初始定殖过程中的菌株多样性。
Appl Environ Microbiol. 2016 May 2;82(10):3082-91. doi: 10.1128/AEM.04143-15. Print 2016 May 15.
5
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.渐进紫：具有基因增益、缺失和重排的多基因组比对。
PLoS One. 2010 Jun 25;5(6):e11147. doi: 10.1371/journal.pone.0011147.
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Reordering contigs of draft genomes using the Mauve aligner.使用 Mauve 比对工具重新排列草图基因组的顺序。
Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10.
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A single regulatory gene is sufficient to alter bacterial host range.单个调控基因足以改变细菌宿主范围。
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10
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions.基于比较基因组学对费氏弧菌重测序靶点的研究：聚焦于点错配和人为扩增。
BMC Genomics. 2008 Mar 25;9:138. doi: 10.1186/1471-2164-9-138.

编码VI型分泌系统的费氏弧菌菌株FQ-A001和ES401的基因组序列草图

Draft Genome Sequences of Type VI Secretion System-Encoding Vibrio fischeri Strains FQ-A001 and ES401.

作者信息

Bultman Katherine M, Cecere Andrew G, Miyashiro Tim, Septer Alecia N, Mandel Mark J

机构信息

Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, Wisconsin, USA.

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.

出版信息

Microbiol Resour Announc. 2019 May 16;8(20):e00385-19. doi: 10.1128/MRA.00385-19.

DOI:10.1128/MRA.00385-19
PMID:31097508
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6522793/
Abstract

The type VI secretion system (T6SS) facilitates lethal competition between bacteria through direct contact. Comparative genomics has facilitated the study of these systems in , which colonizes the squid host Here, we report the draft genome sequences of two lethal strains that encode the T6SS, FQ-A001 and ES401.

摘要

VI型分泌系统（T6SS）通过直接接触促进细菌之间的致死性竞争。比较基因组学有助于在定殖于鱿鱼宿主的 中对这些系统进行研究。在此，我们报告了编码T6SS的两种致死性 菌株FQ-A001和ES401的基因组草图序列。