School of Computer Science, Shaanxi Normal University, Xi'an, 710119, China.
College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, China.
BMC Bioinformatics. 2019 Jun 10;20(Suppl 8):285. doi: 10.1186/s12859-019-2767-8.
DNA is a promising candidate for the construction of biological devices due to its unique properties, including structural simplicity, convenient synthesis, high flexibility, and predictable behavior. And DNA has been widely used to construct the advanced logic devices.
Herein, a molecular probe apparatus was constructed based on DNA molecular computing to perform fluorescent quenching and fluorescent signal recovery, with an ' ON/OFF' switching function. In this study, firstly, we program the streptavidin-mediated fluorescent quenching apparatus based on short-distance strand migration. The variation of fluorescent signal is acted as output. Then DNAzyme as a switching controller was involved to regulate the fluorescent signal increase. Finally, on this base, a cascade DNA logic gate consists of two logic AND operations was developed to enrich probe machine.
The designed probe computing model can be implemented with readout of fluorescence intensity, and exhibits great potential applications in the field of bioimaging as well as disease diagnosis.
由于其独特的性质,包括结构简单、合成方便、灵活性高和可预测的行为,DNA 是构建生物器件的有前途的候选物。并且 DNA 已经被广泛用于构建先进的逻辑器件。
本文基于 DNA 分子计算构建了一种分子探针仪器,以进行荧光猝灭和荧光信号恢复,并具有“开/关”开关功能。在这项研究中,首先,我们基于短距离链迁移编程基于链霉亲和素介导的荧光猝灭仪器。荧光信号的变化作为输出。然后,将 DNA 酶作为开关控制器引入以调节荧光信号的增加。最后,在此基础上,开发了由两个逻辑 AND 操作组成的级联 DNA 逻辑门,以丰富探针机器。
设计的探针计算模型可以通过荧光强度的读取来实现,并在生物成像和疾病诊断等领域具有很大的应用潜力。