Faculty of Biology, Medicine and Health, University of Manchester, Manchester, M13 9PT, UK.
Department of Information Science, Faculty of Science, Toho University, Funabashi, 274-8510, Japan.
Nat Commun. 2019 Jun 20;10(1):2725. doi: 10.1038/s41467-019-10616-z.
Recent research has shown that many types of cancers take control of specific metabolic processes. We compiled metabolic networks corresponding to four healthy and cancer tissues, and analysed the healthy-cancer transition from the metabolic flux change perspective. We used a Probabilistic Minimum Dominating Set (PMDS) model, which identifies a minimum set of nodes that act as driver nodes and control the entire network. The combination of control theory with flux correlation analysis shows that flux correlations substantially increase in cancer states of breast, kidney and urothelial tissues, but not in lung. No change in the network topology between healthy and cancer networks was observed, but PMDS analysis shows that cancer states require fewer controllers than their corresponding healthy states. These results indicate that cancer metabolism is characterised by more streamlined flux distributions, which may be focused towards a reduced set of objectives and controlled by fewer regulatory elements.
最近的研究表明,许多类型的癌症会控制特定的代谢过程。我们编译了对应于四种健康和癌症组织的代谢网络,并从代谢通量变化的角度分析了健康-癌症的转变。我们使用了概率最小支配集(PMDS)模型,该模型确定了一组作为驱动节点并控制整个网络的最小节点集。控制理论与通量相关分析的结合表明,在乳腺、肾脏和尿路上皮组织的癌症状态下,通量相关性显著增加,但在肺部则没有。在健康和癌症网络之间没有观察到网络拓扑的变化,但 PMDS 分析表明,癌症状态需要的控制器比相应的健康状态更少。这些结果表明,癌症代谢的特点是通量分布更加流畅,这可能集中在减少的目标上,并由更少的调节元件控制。