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通过介导的插入突变和 CRISPR/Cas9 在共生和病原酵母中推进功能遗传学

Advancing Functional Genetics Through -Mediated Insertional Mutagenesis and CRISPR/Cas9 in the Commensal and Pathogenic Yeast .

机构信息

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710

出版信息

Genetics. 2019 Aug;212(4):1163-1179. doi: 10.1534/genetics.119.302329. Epub 2019 Jun 26.

Abstract

encompasses a monophyletic group of basidiomycetous yeasts naturally found on the skin of humans and other animals. species have lost genes for lipid biosynthesis, and are therefore lipid-dependent and difficult to manipulate under laboratory conditions. In this study, we applied a recently-developed -mediated transformation protocol to perform transfer (T)-DNA random insertional mutagenesis in A total of 767 transformants were screened for sensitivity to 10 different stresses, and 19 mutants that exhibited a phenotype different from the wild type were further characterized. The majority of these strains had single T-DNA insertions, which were identified within open reading frames of genes, untranslated regions, and intergenic regions. Some T-DNA insertions generated chromosomal rearrangements while others could not be characterized. To validate the findings of our forward genetic screen, a novel clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system was developed to generate targeted deletion mutants for two genes identified in the screen: and This system is based on cotransformation of mediated by , to deliver both a -gRNA construct that induces double-strand DNA breaks and a gene replacement allele that serves as a homology-directed repair template. Targeted deletion mutants for both and were readily generated with this method. This study demonstrates the feasibility and reliability of -mediated transformation to aid in the identification of gene functions in , through both insertional mutagenesis and CRISPR/Cas9-mediated targeted gene deletion.

摘要

包含一组担子菌酵母的单系群,这些酵母天然存在于人类和其他动物的皮肤表面。这些物种已经失去了脂质生物合成的基因,因此是脂质依赖性的,并且在实验室条件下难以操作。在这项研究中,我们应用了最近开发的介导的转化方案,在中进行转移(T)-DNA 随机插入突变。总共筛选了 767 个转化体,以检测它们对 10 种不同应激的敏感性,并且进一步表征了表现出与野生型不同表型的 19 个突变体。这些菌株中的大多数具有单个 T-DNA 插入,这些插入位于基因、非翻译区和基因间区的开放阅读框内。一些 T-DNA 插入产生了染色体重排,而其他插入则无法进行表征。为了验证我们正向遗传筛选的结果,开发了一种新型的成簇规律间隔短回文重复(CRISPR)/Cas9 系统,用于生成在筛选中鉴定的两个基因的靶向缺失突变体:和。该系统基于通过介导的共转化,递送 -gRNA 构建体,该构建体诱导双链 DNA 断裂,以及作为同源定向修复模板的基因替换等位基因。通过这种方法,可以轻松地为和两个基因生成靶向缺失突变体。这项研究证明了介导的转化在通过插入突变和 CRISPR/Cas9 介导的靶向基因缺失来帮助鉴定中的基因功能方面的可行性和可靠性。

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