Department of Physics , Emory University , Atlanta , Georgia 30322 , United States.
J Phys Chem B. 2019 Jul 5;123(26):5395-5404. doi: 10.1021/acs.jpcb.9b02239. Epub 2019 Jun 19.
The temperature-dependent structure and dynamics of two concentric solvent phases, the protein-associated domain (PAD) and the mesodomain, that surround the ethanolamine ammonia-lyase (EAL) protein from Salmonella typhimurium in frozen polycrystalline aqueous solution are addressed by using electron paramagnetic resonance spectroscopy of the paramagnetic nitroxide spin probe, TEMPOL, over the temperature ( T) range 190-265 K. Dimethyl sulfoxide (DMSO), added at 0.5, 2.0, and 4.0% v/v and present at the maximum freeze concentration at T ≤ 245 K, varies the volume of the interstitial aqueous DMSO mesodomain ( V) relative to a fixed PAD volume ( V). The increase in V/ V from 0.8 to 6.0 is quantified by the partitioning of TEMPOL between the two phases. As V/ V is increased, the Arrhenius parameters for activated TEMPOL rotational motion in the mesodomain remain uniform, whereas the parameters for TEMPOL in the PAD show a progressive transformation toward the mesodomain values (higher mobility). An order-disorder transition (ODT) in the PAD is detected by the exclusion of TEMPOL from the PAD into the mesodomain. The ODT T value is systematically lowered by increased V/ V (from 215 to 200 K), and PAD ordering kinks the mesodomain Arrhenius dependence. Thus there is reciprocity in PAD-mesodomain solvent coupling. The results are interpreted as a dominant influence of ice-boundary confinement on the PAD solvent structure and dynamics, which is transmitted through the mesodomain and which decreases with mesodomain volume at increased added DMSO. The systematic tuning of PAD and mesodomain solvent dynamics by the variation of added DMSO is an incisive approach for the resolution of contributions of protein-solvent dynamical coupling to EAL catalysis.
采用电子顺磁共振波谱技术,研究了嗜热鼠伤寒沙门氏菌乙醇胺氨裂解酶(EAL)蛋白周围的两个同心溶剂相(即蛋白相关域(PAD)和介观域)在冷冻多晶水溶液中的温度依赖性结构和动力学。该研究使用了顺磁氮氧自由基探针 TEMPOL,温度范围为 190-265 K。在 T≤245 K 时,最大冻结浓度下,以 0.5、2.0 和 4.0%v/v 的比例添加二甲基亚砜(DMSO),改变了介观域( V)中 DMSO 水间隙的体积( V),相对于固定的 PAD 体积( V)。TEMPOL 在两相之间的分配定量了 V/ V 从 0.8 增加到 6.0。随着 V/ V 的增加,介观域中 TEMPOL 旋转运动的阿伦尼乌斯参数保持均匀,而 PAD 中 TEMPOL 的参数则逐渐向介观域值(更高的流动性)转变。在 PAD 中检测到有序无序转变(ODT),因为 TEMPOL 从 PAD 排斥到介观域。随着 V/ V 的增加(从 215 到 200 K),ODT T 值被系统地降低,并且 PAD 有序性使介观域阿伦尼乌斯依赖关系发生扭曲。因此,PAD-介观域溶剂耦合具有相互作用。结果表明,冰边界限制对 PAD 溶剂结构和动力学有主要影响,这种影响通过介观域传递,并且随着介观域体积的增加而减小,添加的 DMSO 也会增加。通过添加 DMSO 的变化系统地调整 PAD 和介观域溶剂动力学是解决蛋白质-溶剂动态耦合对 EAL 催化贡献的一种有效方法。