Martín-Sánchez Lara, Singh Kumar Saurabh, Avalos Mariana, van Wezel Gilles P, Dickschat Jeroen S, Garbeva Paolina
Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands.
College of Life and Environmental Sciences, Biosciences, University of Exeter, Penryn Campus, Penryn, Cornwall TR10 9FE, United Kingdom.
Beilstein J Org Chem. 2019 May 29;15:1181-1193. doi: 10.3762/bjoc.15.115. eCollection 2019.
Terpene synthases are widely distributed among microorganisms and have been mainly studied in members of the genus . However, little is known about the distribution and evolution of the genes for terpene synthases. Here, we performed whole-genome based phylogenetic analysis of species, and compared the distribution of terpene synthase genes among them. Overall, our study revealed that ten major types of terpene synthases are present within the genus , namely those for geosmin, 2-methylisoborneol, -isozizaene, 7--α-eudesmol, -cubenol, caryolan-1-ol, cyclooctat-9-en-7-ol, isoafricanol, pentalenene and α-amorphene. The species divide in three phylogenetic groups based on their whole genomes for which the distribution of the ten terpene synthases was analysed. Geosmin synthases were the most widely distributed and were found to be evolutionary positively selected. Other terpene synthases were found to be specific for one of the three clades or a subclade within the genus . A phylogenetic analysis of the most widely distributed classes of terpene synthases in comparison to the phylogenomic analysis of this genus is discussed.
萜烯合酶广泛分布于微生物中,并且主要在该属的成员中进行了研究。然而,关于萜烯合酶基因的分布和进化却知之甚少。在此,我们对 个物种进行了基于全基因组的系统发育分析,并比较了它们之间萜烯合酶基因的分布。总体而言,我们的研究表明,该属内存在十种主要类型的萜烯合酶,即土臭素、2-甲基异冰片醇、-异紫穗槐烯、7--α-桉叶醇、-古巴醇、蒈烷-1-醇、环辛-9-烯-7-醇、异非洲醇、戊烯二烯和α-紫穗槐烯的合成酶。根据其全基因组将 个物种分为三个系统发育组,并分析了十种萜烯合酶在其中的分布。土臭素合成酶分布最广,并且被发现受到进化上的正选择。其他萜烯合酶被发现对该属内的三个分支之一或一个亚分支具有特异性。本文讨论了与该属的系统基因组分析相比,对分布最广的几类 萜烯合酶进行的系统发育分析。