三种C群分枝杆菌噬菌体Bipolarisk、Bread和FudgeTart的基因组序列
Genome Sequences of Three Cluster C Mycobacteriophages, Bipolarisk, Bread, and FudgeTart.
作者信息
Bowder Dane M, Gannon Brandon W, Grint Kathryn J, Iltz Jason T, Koch Teryn M, Mahnke Kaitlyn S, Murnan Brea D, Osborn Alexandria M, Schreiber Danielle M, Su Grace L, Troester Jaime G, Doyle Erin L
机构信息
Department of Biology, Doane University, Crete, Nebraska, USA.
Department of Biology, Doane University, Crete, Nebraska, USA
出版信息
Microbiol Resour Announc. 2019 Jul 11;8(28):e00290-19. doi: 10.1128/MRA.00290-19.
Abstract
Three mycobacteriophages, Bipolarisk, Bread, and FudgeTart, were isolated from enriched soil samples found in Crete, NE. All three phages are lytic, belong to subcluster C1, and infect mc155. The structures of the three genomes are similar, with slight variations in gene number and content.
摘要
从美国东北部克里特岛富含细菌的土壤样本中分离出三种分枝杆菌噬菌体，分别为双极噬菌体、面包噬菌体和软糖馅饼噬菌体。这三种噬菌体均为裂解性噬菌体，属于C1亚群，可感染mc155。这三种基因组的结构相似，基因数量和内容略有差异。
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本文引用的文献
1
Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.完整噬菌体基因组的测序、组装与完成
Methods Mol Biol. 2018;1681:109-125. doi: 10.1007/978-1-4939-7343-9_9.
2
PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.PECAN：用于非数据依赖采集串联质谱数据的无文库肽段检测方法。
Nat Methods. 2017 Sep;14(9):903-908. doi: 10.1038/nmeth.4390. Epub 2017 Aug 7.
3
PhagesDB: the actinobacteriophage database.噬菌体数据库：放线菌噬菌体数据库。
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
4
MICROBIOLOGY. Phage therapy redux--What is to be done?微生物学。噬菌体疗法的复兴——该怎么做？
Science. 2015 Dec 4;350(6265):1163-4. doi: 10.1126/science.aad6791.
5
Gene: a gene-centered information resource at NCBI.基因：美国国立医学图书馆国家生物技术信息中心的一个以基因为中心的信息资源库。
Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42. doi: 10.1093/nar/gku1055. Epub 2014 Oct 29.
6
Molecular Genetics of Mycobacteriophages.分枝杆菌噬菌体的分子遗传学
Microbiol Spectr. 2014 Mar 7;2(2):1-36.
7
Phamerator: a bioinformatic tool for comparative bacteriophage genomics.Phamerator：一种用于比较噬菌体基因组学的生物信息学工具。
BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.
8
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
9
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.基因标记：用于在原核生物、真核生物和病毒中寻找基因的网络软件。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4. doi: 10.1093/nar/gki487.
10
The HHpred interactive server for protein homology detection and structure prediction.用于蛋白质同源性检测和结构预测的HHpred交互式服务器。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8. doi: 10.1093/nar/gki408.
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