Hrynkiewicz Katarzyna, Patz Sascha, Ruppel Silke
Department of Microbiology, Faculty of Biology and Environmental Protection, N. Copernicus University in Torun, Lwowska 1, PL-87-100 Torun, Poland.
Algorithms in Bioinformatics, Center for Bioinformatics, University of Tuebingen, Sand 14, D-72076 Tuebingen, Germany.
J Adv Res. 2019 May 16;19:49-56. doi: 10.1016/j.jare.2019.05.002. eCollection 2019 Sep.
Despite the great interest in using halophyte L. as a crop in extreme saline habitats, little is known about the role played by associated endophytic bacteria in increasing tolerance of the host-plant to nutrient deficiency. Main objectives of this study were to investigate the community composition of diazotrophic endophytes of grown under natural conditions, and determine the proportion of plant-growth promoting bacterial strains able to fix N. To quantify the abundance of diazotrophic bacterial endophytes in stems and roots of , H gene and 16S rDNA copy numbers were assessed by quantitative real-time PCR, and characterized the taxonomic structure of cultivable bacteria based on selective medium for diazotrophs. The highest copy numbers of H and 16S rDNA were observed in the stems of plants growing at the test site characterized by lower salinity, and correlated with high N concentrations in plant tissues. The abundance of bacterial diazotrophs isolated from plant tissues ranged from 3.6 to 6.3 (log of cfu per gram dry plant tissue) and varied in a site- and plant-organ manner. Proteobacteria dominated in plants growing in lower salinity while Actinobacteria prevailed in plants originating from higher salinity, what suggest better adaptation of this group of bacteria to extreme salinity. The results provide insights into new species of diazotrophs associated with halophytes that can be used to optimize strategies for selecting biostimulants useful in saline soils.
尽管人们对在极端盐碱化栖息地将盐生植物L.用作作物有着浓厚兴趣,但对于相关内生细菌在提高宿主植物对养分缺乏耐受性方面所起的作用却知之甚少。本研究的主要目的是调查在自然条件下生长的L.的固氮内生菌群落组成,并确定能够固氮的促进植物生长细菌菌株的比例。为了量化L.茎和根中固氮细菌内生菌的丰度,通过定量实时PCR评估H基因和16S rDNA的拷贝数,并基于固氮菌的选择性培养基对可培养细菌的分类结构进行表征。在盐度较低的试验点生长的植物茎中观察到H和16S rDNA的最高拷贝数,且与植物组织中的高氮浓度相关。从植物组织中分离出的固氮细菌丰度范围为3.6至6.3(每克干燥植物组织的cfu对数),并因地点和植物器官而异。变形菌门在盐度较低的植物中占主导地位,而放线菌门在来自高盐度的植物中占优势,这表明这组细菌对极端盐度具有更好的适应性。这些结果为与盐生植物相关的新固氮菌物种提供了见解,可用于优化在盐渍土壤中选择有用生物刺激剂的策略。