octoFLU：美国猪群中检测到的甲型流感病毒基因序列进化起源的自动分类
octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine.
作者信息
Chang Jennifer, Anderson Tavis K, Zeller Michael A, Gauger Phillip C, Vincent Amy L
机构信息
Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, Iowa, USA.
Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
出版信息
Microbiol Resour Announc. 2019 Aug 8;8(32):e00673-19. doi: 10.1128/MRA.00673-19.
The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.
猪流感甲型病毒（IAV）8个基因的多样性反映了非猪宿主的引入以及随后的抗原漂移和转变。在此，我们精心策划了一个数据集，并展示了一种为查询基因片段分配进化谱系和遗传分支的流程。
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