Department of Chemistry, Laboratory of Genetics, Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, Madison Wisconsin.
Biophys J. 2019 Dec 3;117(11):2047-2053. doi: 10.1016/j.bpj.2019.07.038. Epub 2019 Jul 30.
It is now rare to find biological, or genetic investigations that do not rely on the tools, data, and thinking drawn from the genomic sciences. Much of this revolution is powered by contemporary sequencing approaches that readily deliver large, genome-wide data sets that not only provide genetic insights but also uniquely report molecular outcomes from experiments that biophysicists are increasingly using for potentiating structural and mechanistic investigations. In this perspective, I describe a path of how biophysical thinking greatly contributed to this revolution in ways that parallel advancements in computer science through discussion of several key inventions, described as "foundational devices." These discussions also point at the future of how biophysics and the genomic sciences may become more finely integrated for empowering new measurement paradigms for biological investigations.
现在,很少有生物学或遗传学研究不依赖于基因组科学所提供的工具、数据和思维。这场革命的大部分动力来自于当代测序方法,这些方法可以轻松提供大型全基因组数据集,不仅提供遗传见解,还独特地报告生物物理学家越来越多地用于增强结构和机制研究的实验的分子结果。在这个观点中,我通过讨论几个被描述为“基础设备”的关键发明,描述了生物物理思维如何以与计算机科学的进步相媲美的方式为这场革命做出了巨大贡献。这些讨论还指出了生物物理学和基因组科学如何更加紧密地结合,为生物研究提供新的测量范式的未来。