从河豚（斯氏圆腹鲀）分离出的珊瑚希瓦氏菌菌株A687的基因组序列。
Genome sequence of Shewanella corallii strain A687 isolated from pufferfish (Sphoeroides spengleri).
作者信息
Azevedo Gustavo P R, Paz Pedro H C da, Mattsson Hannah K, Moreira Ana Paula B, Leomil Luciana, Calegário Gabriela, Appolinario Luciana, Vidal Lívia, Silva Bruno S, Tonon Luciane A Chimetto, Tschoeke Diogo A, Garcia Gizele D, Thompson Fabiano L, Thompson Cristiane C
机构信息
Universidade Federal do Rio de Janeiro, Institute of Biology and SAGE-COPPE, Rio de Janeiro, RJ, Brazil.
Universidade de São Paulo, Instituto de Química de São Carlos (IQSC-USP), São Carlos, SP, Brazil.
出版信息
Genet Mol Biol. 2020 Feb 17;43(1):e20180314. doi: 10.1590/1678-4685-GMB-2018-0314. eCollection 2020.
Abstract
We present here the genome sequence of Shewanella corallii strain A687 isolated from pufferfish Sphoeroides spengleri (Family Tetraodontidae). The assembly consists of 5,215,037 bp and contains 284 contigs, with a G+C content of 50.3%.
摘要
我们在此展示从鲀鱼（四齿鲀科）分离出的珊瑚希瓦氏菌A687菌株的基因组序列。该组装序列由5,215,037个碱基对组成，包含284个重叠群，G+C含量为50.3%。
相似文献
1
Genome sequence of Shewanella corallii strain A687 isolated from pufferfish (Sphoeroides spengleri).从河豚（斯氏圆腹鲀）分离出的珊瑚希瓦氏菌菌株A687的基因组序列。
Genet Mol Biol. 2020 Feb 17;43(1):e20180314. doi: 10.1590/1678-4685-GMB-2018-0314. eCollection 2020.
2
Genome size evaluation in Tetraodontiform fishes from the Neotropical region.新热带区鲀形目鱼类基因组大小评估。
Mar Biotechnol (NY). 2009 Nov-Dec;11(6):680-5. doi: 10.1007/s10126-009-9215-0. Epub 2009 Jul 10.
3
Enterovibrio baiacu sp. nov.肠杆菌属 baiacu 新种
Curr Microbiol. 2020 Jan;77(1):154-157. doi: 10.1007/s00284-019-01785-7. Epub 2019 Oct 16.
4
Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral.珊瑚希瓦氏菌，一种从红海珊瑚中分离得到的海洋细菌。
Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2293-2297. doi: 10.1099/ijs.0.015768-0. Epub 2009 Nov 13.
5
Accidental discovery of a Tetraodontidae () within a cuttlefish () bought in a fish shop in Italy: risk assessment associated with the presence of Tetrodotoxin.在意大利一家鱼店购买的一条乌贼（）体内意外发现一条四齿鲀科鱼（）：与河豚毒素存在相关的风险评估。
Ital J Food Saf. 2023 Jun 8;12(2):11117. doi: 10.4081/ijfs.2023.11117.
6
Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.海下希瓦氏菌新种，一种从海水中分离出的γ-变形菌。
Int J Syst Evol Microbiol. 2019 Jan;69(1):39-45. doi: 10.1099/ijsem.0.003059. Epub 2018 Nov 30.
7
8
9
Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria).嗜麦芽窄食单胞菌菌株UCD-SED8（γ-变形菌门）的基因组序列草图
Genome Announc. 2015 Nov 5;3(6):e01276-15. doi: 10.1128/genomeA.01276-15.
10
Draft-genome sequence of Shewanella algae strain C6G3.嗜冷栖热袍菌C6G3菌株的基因组草图序列
Stand Genomic Sci. 2015 Jul 23;10:43. doi: 10.1186/s40793-015-0022-0. eCollection 2015.
引用本文的文献
1
Phylogenetic investigation of Gammaproteobacteria proteins involved in exogenous long-chain fatty acid acquisition and assimilation.参与外源长链脂肪酸获取与同化的γ-变形菌纲蛋白质的系统发育研究。
Biochem Biophys Rep. 2023 Jul 4;35:101504. doi: 10.1016/j.bbrep.2023.101504. eCollection 2023 Sep.
本文引用的文献
1
Draft Genome Sequence of a Shewanella halifaxensis Strain Isolated from the Intestine of Marine Red Seabream (Pagrus major), Which Includes an Integrative Conjugative Element with Macrolide Resistance Genes.从海洋真鲷（Pagrus major）肠道中分离出的哈氏希瓦氏菌菌株的基因组序列草图，其中包括一个带有大环内酯抗性基因的整合性接合元件。
Genome Announc. 2018 Apr 19;6(16):e00297-18. doi: 10.1128/genomeA.00297-18.
2
Tetrodotoxin-Producing Bacteria: Detection, Distribution and Migration of the Toxin in Aquatic Systems.产河豚毒素细菌：水生系统中该毒素的检测、分布及迁移
Toxins (Basel). 2017 May 17;9(5):166. doi: 10.3390/toxins9050166.
3
Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil).巴西阿布罗霍斯礁系统中草皮的分类学和功能宏基因组特征
PLoS One. 2016 Aug 22;11(8):e0161168. doi: 10.1371/journal.pone.0161168. eCollection 2016.
4
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.antiSMASH 3.0——用于生物合成基因簇基因组挖掘的综合资源。
Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43. doi: 10.1093/nar/gkv437. Epub 2015 May 6.
5
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.A5-miseq：一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
6
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
7
The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis.假单胞菌属包含代谢多样的细菌，适应共生。
Environ Microbiol. 2013 Jul;15(7):2095-113. doi: 10.1111/1462-2920.12123. Epub 2013 Apr 18.
8
Quality control and preprocessing of metagenomic datasets.宏基因组数据集的质量控制和预处理。
Bioinformatics. 2011 Mar 15;27(6):863-4. doi: 10.1093/bioinformatics/btr026. Epub 2011 Jan 28.
9
Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral.珊瑚希瓦氏菌，一种从红海珊瑚中分离得到的海洋细菌。
Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2293-2297. doi: 10.1099/ijs.0.015768-0. Epub 2009 Nov 13.
10
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder：一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
Zotero 插件