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基于癌症基因组图谱的肺鳞癌淋巴结转移与转移相关基因的鉴定。

Lymph node metastasis in lung squamous cell carcinoma and identification of metastasis-related genes based on the Cancer Genome Atlas.

机构信息

Department of Lung Cancer Surgery, Tianjin Key Laboratory of Lung Cancer Metastasis and Tumor Microenvironment, Tianjin Lung Cancer Institute, Tianjin Medical University General Hospital, Tianjin, China.

出版信息

Cancer Med. 2019 Oct;8(14):6280-6294. doi: 10.1002/cam4.2525. Epub 2019 Sep 3.

Abstract

Squamous cell carcinoma (SCC) is a unique clinical and histological category that accounts for about 30% of total lung cancer. To identify risk factors for lymph node metastasis and analyze the molecular features of these metastases in lung SCC, a retrospective study was performed for 170 lung SCC patients who underwent surgical treatment. The overall survival of these patients with or without lymph node metastasis (LM/NLM) was analyzed using the Kaplan-Meier method. We also used the TCGA database to compare the differentially expressed genes (DEGs) in patients with stage T1-2 and T3-4 lung SCC. Data from both our retrospective study and the TCGA database demonstrated a correlation between age and stage T1-T2 LM (P = .002). There were significant differences between the LM and NLM groups in both mean survival time and median survival time for different T-stages (P = .031). There were 176 upregulated and 177 downregulated DEGs between the LM and NLM groups in the stage T1-2 group and 93 upregulated and 34 downregulated DEGs in the stage T3-T4 group. These differentially expressed genes were predicted to participate in five cellular components, five molecular functions, and five biological processes. There were 20 genes, including GCG, CASR, NPY, CGA, TAC1, ALB, APOA1, CRH, CHRH, TRH, and GHSR, located at the core of the protein-protein interaction network in the stage T1-2 group and 11 genes, including F2, CASR, GRM1, GNRHR, GRPR, NTSR1, PROKR2, UTS2D, PTH, ALB, and FGA, in the stage T3-4 group. Overall, LM plays a key role in the treatment response and prognosis of SCC patients. Several risk factors, including age and stage, were identified for LM. There was a previously undiscovered enrichment of significant novel genes in lung SCC between the LM and NLM groups, which may have the potential for predicting prognosis and targeting.

摘要

鳞状细胞癌 (SCC) 是一种独特的临床和组织学类别,约占肺癌总数的 30%。为了确定肺 SCC 淋巴结转移的危险因素,并分析这些转移的分子特征,对 170 例接受手术治疗的肺 SCC 患者进行了回顾性研究。采用 Kaplan-Meier 法分析有或无淋巴结转移 (LM/NLM) 的患者的总生存率。我们还使用 TCGA 数据库比较了 T1-2 期和 T3-4 期肺 SCC 患者的差异表达基因 (DEGs)。我们的回顾性研究和 TCGA 数据库的数据均表明,年龄与 T1-T2 LM 分期之间存在相关性 (P=.002)。在 T1-T2 期 LM 与 NLM 组之间,不同 T 分期的平均生存时间和中位生存时间均存在显著差异 (P=.031)。在 T1-2 期组中,LM 与 NLM 组之间有 176 个上调和 177 个下调的 DEGs,在 T3-T4 期组中有 93 个上调和 34 个下调的 DEGs。这些差异表达基因预测参与了五个细胞成分、五个分子功能和五个生物学过程。在 T1-2 期组中,有 20 个基因,包括 GCG、CASR、NPY、CGA、TAC1、ALB、APOA1、CRH、CHRH、TRH 和 GHSR,位于蛋白质-蛋白质相互作用网络的核心,在 T3-T4 期组中,有 11 个基因,包括 F2、CASR、GRM1、GNRHR、GRPR、NTSR1、PROKR2、UTS2D、PTH、ALB 和 FGA。总的来说,LM 在 SCC 患者的治疗反应和预后中起着关键作用。确定了包括年龄和分期在内的几个与 LM 相关的危险因素。在 LM 和 NLM 组之间,肺 SCC 中发现了一组以前未被发现的显著新基因的富集,这可能具有预测预后和靶向治疗的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1097/6797670/0295ac1bb214/CAM4-8-6280-g001.jpg

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