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诺如病毒胃肠炎暴发、基因组多样性与进化:概述。

Norovirus Gastroenteritis Outbreaks, Genomic Diversity and Evolution: An Overview.

机构信息

Dr Mohammad Kamruzzaman Khan, Assistant Professor, Department of Community Medicine, Mymensingh Medical College, Mymensingh 2206, Bangladesh; Doctoral students at the Department of Medicine, Faculty of Veterinary Science, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; E-mail:

出版信息

Mymensingh Med J. 2021 Jul;30(3):863-873.

Abstract

Norovirus, often called winter vomiting bug, is the most common cause of outbreaks of acute gastroenteritis in all age groups all over the world. It was discovered in 1972; belong to the genus Norovirus in the family Caliciviridae. Based on genomic organization and phylogenetic analysis, the family Caliciviridae is divided into four genera- Norovirus, Sapovirus, Vesivirus and Lagovirus. The aim of this review article was to find out the present status of prevalence and evolution of norovirus strains in developed and developing countries. In this article various literature on norovirus from different countries was reviewed. The detection of norovirus in the lower middle income countries (LMIC) was reported 15% in cases and 8% in controls during 1997 to 2018. On the other hand, detection rate of norovirus in low income countries (LIC) was 11% in cases and 9% in controls during the same period. Overall detection rate of norovirus was 14% in LIMC and 8% in LIC during 1997 to 2018. Noroviruses are divided genetically into seven different type of Geno groups namely GI, GII, GIII, GIV, GV, GVI and GVII which are further classified into different genetic clusters or genotypes. For example, Geno group II, the most prevalent human Geno group, presently contains 19 genotypes. Among the genogroups I, II and IV infect humans, on the other hand genogroup III infects bovine species and genogroup V was isolated from mice. Several new noroviruses were reported and the number of genogroups increased to 10 (GI-GX) and the number of genotypes expanded to 49: 9 GI, 27 GII, 3 GIII, 2 GIV, 2 GV, 2GVI, 1 GVII, 1 GVIII, 1 GIX, 1 GX. Noroviruses are spread directly from individual to individual as well as indirectly via contaminated food and water. They are highly contagious, and around twenty virus particles can cause an infection. This virus usually exhibits winter seasonality. The global norovirus prevalence in under-5 years, ≥5 years and mixed age was similar (16% - 19%). Norovirus infection is characterized by diarrhea, vomiting, fever, headache and stomach pain. It may be complicated with dehydration and electrolyte imbalance. Gastroenteritis develops 12 to 48 hours after exposure and recovery typically occurs within 1 to 3 days. There is no specific treatment of norovirus gastroenteritis. Prevention includes proper hand washing and cleaning or disinfection of contaminated surfaces. Various genotypes of norovirus may be circulating around the world and can emerge either nationally or globally. In this overview, general characteristics of norovirus, current status of genomic diversity and classification, recent status of norovirus gastroenteritis outbreaks in the developed and developing countries is outlined for comprehensive understanding of the present status of prevalence and evolution of norovirus strains to develop strategies for prevention and control of norovirus infection in human.

摘要

诺如病毒,通常被称为冬季呕吐病毒,是全世界所有年龄段人群急性肠胃炎暴发的最常见原因。它于 1972 年被发现;属于杯状病毒科诺如病毒属。基于基因组组织和系统发育分析,杯状病毒科分为四个属——诺如病毒、沙波病毒、杯状病毒和 Lagovirus。本文的目的是了解发达国家和发展中国家诺如病毒株的流行和进化现状。本文综述了来自不同国家的各种诺如病毒文献。1997 年至 2018 年,中低收入国家(LMIC)的病例中检测到 15%的诺如病毒,对照组中检测到 8%。同期,低收入国家(LIC)的病例中检测到 11%,对照组中检测到 9%。1997 年至 2018 年,中低收入国家的总体诺如病毒检出率为 14%,低收入国家的检出率为 8%。诺如病毒在遗传上分为 7 种不同的基因类型,即 GI、GII、GIII、GIV、GV、GVI 和 GVII,这些基因类型进一步分为不同的遗传群或基因型。例如,最常见的人类基因 II 组,目前包含 19 种基因型。在基因 I、II 和 IV 组中,人类感染,另一方面,基因 III 组感染牛种,基因 V 组从老鼠中分离出来。已经报道了几种新的诺如病毒,基因组的数量增加到 10 个(GI-GX),基因型的数量增加到 49 个:9 个 GI、27 个 GII、3 个 GIII、2 个 GIV、2 个 GV、2 个 GVI、1 个 GVII、1 个 GVIII、1 个 GIX、1 个 GX。诺如病毒通过直接接触个体和间接接触受污染的食物和水传播。它们具有高度传染性,大约 20 个病毒颗粒就可以引起感染。这种病毒通常表现出冬季季节性。5 岁以下、≥5 岁和混合年龄的全球诺如病毒流行率相似(16%-19%)。诺如病毒感染的特征是腹泻、呕吐、发热、头痛和胃痛。它可能会导致脱水和电解质失衡。肠胃炎在暴露后 12 至 48 小时发生,通常在 1 至 3 天内恢复。目前还没有针对诺如病毒肠胃炎的具体治疗方法。预防措施包括正确洗手以及对污染表面进行清洁或消毒。世界各地可能存在各种诺如病毒基因型,可能在全国或全球范围内出现。在本概述中,概述了诺如病毒的一般特征、基因组多样性和分类的现状、发达国家和发展中国家近期诺如病毒肠胃炎暴发的现状,以便全面了解诺如病毒株流行和进化的现状,制定预防和控制人类诺如病毒感染的策略。

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