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纤维二糖和纤维糊精磷酸化酶组在体外和体内的探索:对纤维素分解代谢的影响

In vitro and in vivo exploration of the cellobiose and cellodextrin phosphorylases panel in : implication for cellulose catabolism.

作者信息

Liu Nian, Fosses Aurélie, Kampik Clara, Parsiegla Goetz, Denis Yann, Vita Nicolas, Fierobe Henri-Pierre, Perret Stéphanie

机构信息

Aix-Marseille Univ, CNRS, LCB UMR 7283, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France.

2Aix-Marseille Univ, CNRS, BIP UMR 7281, Marseille, France.

出版信息

Biotechnol Biofuels. 2019 Sep 3;12:208. doi: 10.1186/s13068-019-1549-x. eCollection 2019.

Abstract

BACKGROUND

In anaerobic cellulolytic micro-organisms, cellulolysis results in the action of several cellulases gathered in extracellular multi-enzyme complexes called cellulosomes. Their action releases cellobiose and longer cellodextrins which are imported and further degraded in the cytosol to fuel the cells. In , an anaerobic and cellulolytic mesophilic bacteria, three cellodextrin phosphorylases named CdpA, CdpB, and CdpC, were identified in addition to the cellobiose phosphorylase (CbpA) previously characterized. The present study aimed at characterizing them, exploring their implication during growth on cellulose to better understand the life-style of cellulolytic bacteria on such substrate.

RESULTS

The three cellodextrin phosphorylases from displayed marked different enzymatic characteristics. They are specific for cellodextrins of different lengths and present different values. CdpC is the most active enzyme before CdpA, and CdpB is weakly active. Modeling studies revealed that a mutation of a conserved histidine residue in the phosphate ion-binding pocket in CdpB and CdpC might explain their activity-level differences. The genes encoding these enzymes are scattered over the chromosome of and only the expression of the gene encoding the cellobiose phosphorylase and the gene is induced during cellulose growth. Characterization of four independent mutants constructed in for each of the cellobiose and cellodextrin phosphorylases encoding genes indicated that only the cellobiose phosphorylase is essential for growth on cellulose.

CONCLUSIONS

Unexpectedly, the cellobiose phosphorylase but not the cellodextrin phosphorylases is essential for the growth of the model bacterium on cellulose. This suggests that the bacterium adopts a "short" dextrin strategy to grow on cellulose, even though the use of long cellodextrins might be more energy-saving. Our results suggest marked differences in the cellulose catabolism developed among cellulolytic bacteria, which is a result that might impact the design of future engineered strains for biomass-to-biofuel conversion.

摘要

背景

在厌氧纤维素分解微生物中,纤维素分解是由聚集在称为纤维小体的细胞外多酶复合物中的几种纤维素酶作用的结果。它们的作用释放出纤维二糖和更长的纤维糊精,这些物质被导入细胞溶质中并进一步降解,为细胞提供能量。在嗜温厌氧纤维素分解菌中,除了先前已鉴定的纤维二糖磷酸化酶(CbpA)外,还鉴定出了三种纤维糊精磷酸化酶,分别命名为CdpA、CdpB和CdpC。本研究旨在对它们进行表征,探索它们在纤维素生长过程中的作用,以更好地了解纤维素分解菌在这种底物上的生活方式。

结果

来自该菌的三种纤维糊精磷酸化酶表现出明显不同的酶学特性。它们对不同长度的纤维糊精具有特异性,并且呈现出不同的Km值。CdpC是活性最高的酶,其次是CdpA,而CdpB活性较弱。建模研究表明,CdpB和CdpC中磷酸离子结合口袋中一个保守组氨酸残基的突变可能解释了它们活性水平的差异。编码这些酶的基因分散在该菌染色体上,并且在纤维素生长过程中,只有编码纤维二糖磷酸化酶的基因和该基因被诱导表达。对该菌中针对每个纤维二糖和纤维糊精磷酸化酶编码基因构建的四个独立突变体的表征表明,只有纤维二糖磷酸化酶对于在纤维素上生长是必需的。

结论

出乎意料的是,纤维二糖磷酸化酶而非纤维糊精磷酸化酶对于该模式细菌在纤维素上的生长是必需的。这表明该细菌在纤维素上生长采用了“短”糊精策略,尽管使用长纤维糊精可能更节能。我们的结果表明,纤维素分解菌之间在纤维素分解代谢方面存在显著差异,这一结果可能会影响未来用于生物质到生物燃料转化的工程菌株设计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9430/6720390/d59f74ac4877/13068_2019_1549_Fig1_HTML.jpg

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