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从系列晶体学数据中解析出的超快结构变化

Ultrafast Structural Changes Decomposed from Serial Crystallographic Data.

作者信息

Ren Zhong

机构信息

Department of Chemistry , University of Illinois at Chicago , Chicago , Illinois 60607 , United States.

Renz Research, Inc. , Westmont , Illinois 60559 , United States.

出版信息

J Phys Chem Lett. 2019 Nov 21;10(22):7148-7163. doi: 10.1021/acs.jpclett.9b02375. Epub 2019 Nov 7.

Abstract

Direct visualization of electronic and molecular events during biochemical reactions is essential to mechanistic insights. This Letter presents an in-depth analysis of the serial crystallographic data sets collected by Barends and Schlichting et al. ( 2015 , 350 , 445 ) that probe the ligand photodissociation in carbonmonoxy myoglobin. This analysis reveals electron density changes caused by the formation of high-spin 3d atomic orbitals of the heme iron upon photolysis and their dynamic behaviors within the first few picoseconds. The heme iron is found popping out of and recoiling back into the heme plane in succession. These findings provide long-awaited visual validations for previous works using ultrafast spectroscopy and molecular dynamics simulations. Electron density variations are also found largely in the solvent during the first period of a low-frequency oscillation. This work demonstrates the importance of the analytical methods in detecting and isolating weak, transient signals of electronic changes arising from chemical reactions.

摘要

在生化反应过程中直接观察电子和分子事件对于深入理解其机制至关重要。本文对Barends和Schlichting等人(2015年,350卷,445页)收集的一系列晶体学数据集进行了深入分析,这些数据集用于探测一氧化碳肌红蛋白中的配体光解离。该分析揭示了光解时血红素铁的高自旋3d原子轨道形成所引起的电子密度变化及其在最初几皮秒内的动态行为。发现血红素铁相继弹出并反弹回血红素平面。这些发现为先前使用超快光谱和分子动力学模拟的工作提供了期待已久的视觉验证。在低频振荡的第一阶段,溶剂中也发现了很大的电子密度变化。这项工作证明了分析方法在检测和分离化学反应中产生的微弱、瞬态电子变化信号方面的重要性。

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Ultrafast Structural Changes Decomposed from Serial Crystallographic Data.从系列晶体学数据中解析出的超快结构变化
J Phys Chem Lett. 2019 Nov 21;10(22):7148-7163. doi: 10.1021/acs.jpclett.9b02375. Epub 2019 Nov 7.

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