School of Earth Sciences, University of Bristol, Bristol BS8 1TQ, UK.
Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Proc Biol Sci. 2019 Nov 6;286(1914):20191662. doi: 10.1098/rspb.2019.1662. Epub 2019 Oct 30.
Whole-genome duplication (WGD) has occurred commonly in land plant evolution and it is often invoked as a causal agent in diversification, phenotypic and developmental innovation, as well as conferring extinction resistance. The ancient and iconic lineage of is no exception, where WGD has been inferred to have occurred prior to the Cretaceous-Palaeogene (K-Pg) boundary, coincident with WGD events in angiosperms. In the absence of high species diversity, WGD in is interpreted to have facilitated the long-term survival of the lineage. However, this characterization remains uncertain as these analyses of the WGD event have not accounted for fossil diversity. Here, we analyse additional available transcriptomes and summarize the fossil record. Our results confirm support for at least one WGD event shared among the majority of extant species. Furthermore, we use improved dating methods to constrain the age of gene duplication in geological time and identify two successive WGD events. The two WGD events occurred during the Carboniferous and Triassic, respectively, rather than in association with the K-Pg boundary. WGD events are believed to drive high rates of trait evolution and innovations, but analysed trends of morphological evolution across the historical diversity of provide little evidence for further macroevolutionary consequences following WGD. WGD events cannot have conferred extinction resistance to the lineage through the K-Pg boundary since the ploidy events occurred hundreds of millions of years before this mass extinction and we find evidence of extinction among fossil polyploid lineages. Our findings precipitate the need for a review of the proposed roles of WGDs in biological innovation and extinction survival in angiosperm and non-angiosperm lineages alike.
全基因组复制(WGD)在陆地植物进化中经常发生,它通常被认为是多样化、表型和发育创新的原因,并赋予了灭绝抗性。标志性的谱系也不例外,其中 WGD 被推断发生在白垩纪-古近纪(K-Pg)边界之前,与被子植物的 WGD 事件同时发生。由于物种多样性低,被解释为促进了该谱系的长期生存。然而,这种特征仍然不确定,因为这些对谱系 WGD 事件的分析没有考虑到化石多样性。在这里,我们分析了更多可用的转录组并总结了化石记录。我们的结果证实了大多数现存的支持至少一次 WGD 事件。此外,我们使用改进的测年方法将基因复制的年龄限制在地质时间内,并确定了两个连续的谱系 WGD 事件。这两个 WGD 事件分别发生在石炭纪和三叠纪,而不是与 K-Pg 边界相关。WGD 事件被认为会导致性状进化和创新的高速率,但分析跨越谱系历史多样性的形态进化趋势几乎没有证据表明 WGD 后有进一步的宏观进化后果。WGD 事件不能通过 K-Pg 边界赋予谱系灭绝抗性,因为多倍体事件发生在这次大规模灭绝之前的数亿年,我们发现化石多倍体谱系中存在灭绝的证据。我们的发现需要对 WGD 在被子植物和非被子植物谱系中的生物创新和灭绝生存中的作用进行审查。