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DisProt:2020 年的内在蛋白无序注释。

DisProt: intrinsic protein disorder annotation in 2020.

机构信息

Department of Biomedical Sciences, University of Padova, Padova 35121, Italy.

MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary.

出版信息

Nucleic Acids Res. 2020 Jan 8;48(D1):D269-D276. doi: 10.1093/nar/gkz975.

Abstract

The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from the literature. Here we report recent developments with DisProt (version 8), including the doubling of protein entries, a new disorder ontology, improvements of the annotation format and a completely new website. The website includes a redesigned graphical interface, a better search engine, a clearer API for programmatic access and a new annotation interface that integrates text mining technologies. The new entry format provides a greater flexibility, simplifies maintenance and allows the capture of more information from the literature. The new disorder ontology has been formalized and made interoperable by adopting the OWL format, as well as its structure and term definitions have been improved. The new annotation interface has made the curation process faster and more effective. We recently showed that new DisProt annotations can be effectively used to train and validate disorder predictors. We believe the growth of DisProt will accelerate, contributing to the improvement of function and disorder predictors and therefore to illuminate the 'dark' proteome.

摘要

蛋白质无序数据库(DisProt,网址:https://disprot.org)提供了从文献中手动整理的内在无序蛋白质注释。本文报告了 DisProt(版本 8)的最新进展,包括蛋白质条目数增加了一倍,无序本体论得到了更新,注释格式得到了改进,以及一个全新的网站。该网站包括重新设计的图形界面、更好的搜索引擎、更清晰的用于编程访问的 API,以及一个新的整合文本挖掘技术的注释界面。新的条目格式提供了更大的灵活性,简化了维护工作,并允许从文献中捕获更多信息。新的无序本体论已通过采用 OWL 格式进行形式化和互操作,并且其结构和术语定义也得到了改进。新的注释界面使注释过程更快、更有效。我们最近表明,新的 DisProt 注释可有效用于训练和验证无序预测器。我们相信 DisProt 的增长将加速,有助于提高功能和无序预测器的性能,从而阐明“黑暗”蛋白质组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/511b/7145575/d57a13e87174/gkz975fig1.jpg

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