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iCrotoK-PseAAC:根据周的五步规则,通过混合位置相对统计特征来识别赖氨酸巴豆酰化位点。

iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou's 5-step rule.

机构信息

Department of Information Technology, King Abdul Aziz University, Rabigh, Kingdom of Saudi Arabia.

Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan.

出版信息

PLoS One. 2019 Nov 21;14(11):e0223993. doi: 10.1371/journal.pone.0223993. eCollection 2019.

Abstract

Among different post-translational modifications (PTMs), one of the most important one is the lysine crotonylation in proteins. Its importance cannot be undermined related to different diseases and essential biological practice. The key step for finding the hidden mechanisms of crotonylation along with their occurrence sites is to completely apprehend the mechanism behind this biological process. In previously reported studies, researchers have used different techniques, like position weighted matrix (PWM), support vector machine (SVM), k nearest neighbors (KNN), and many others. However, the maximum prediction accuracy achieved was not such high. To address this, herein, we propose an improved predictor for lysine crotonylation sites named iCrotoK-PseAAC, in which we have incorporated various position and composition relative features along with statistical moments into PseAAC. The results of self-consistency testing were 100% accurate, while the 10-fold cross validation gave 99.0% accuracy. Based on the validation and comparison of model, it is concluded that the iCrotoK-PseAAC is more accurate than the previously proposed models.

摘要

在各种翻译后修饰(PTMs)中,蛋白质赖氨酸巴豆酰化是最重要的一种。它在不同疾病和重要的生物学实践中的重要性不可低估。发现巴豆酰化隐藏机制及其发生部位的关键步骤是完全理解这一生物学过程背后的机制。在之前的报道研究中,研究人员使用了不同的技术,如位置加权矩阵(PWM)、支持向量机(SVM)、k 近邻(KNN)等。然而,达到的最大预测精度并不高。针对这一点,本文提出了一种名为 iCrotoK-PseAAC 的赖氨酸巴豆酰化位点的改进预测器,其中我们将各种位置和组成相对特征以及统计矩结合到 PseAAC 中。自一致性测试的结果为 100%准确,而 10 倍交叉验证的准确率为 99.0%。基于模型的验证和比较,得出结论,iCrotoK-PseAAC 比以前提出的模型更准确。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b8be/6874067/ead5ea557f0e/pone.0223993.g001.jpg

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