Department of Chemistry, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN, 55455, USA.
National High Magnetic Field Lab, 1800 East Paul Dirac Dr., Tallahassee, FL, 32310, USA.
J Biomol NMR. 2020 Jan;74(1):61-69. doi: 10.1007/s10858-019-00290-0. Epub 2019 Nov 23.
Incorporation of F into proteins allows for the study of their molecular interactions via NMR. The study of F labeled aromatic amino acids has largely focused on 4-,5-, or 6-fluorotryptophan, 4-fluorophenylalanine, (4,5, or 6FW) or 3-fluorotyrosine (3FY), whereas 2-fluorotyrosine (2FY) has remained largely understudied. Here we report a comparative analysis with different fluorinated amino acids. We first report the NMR chemical shift responsiveness of five aromatic amino acid mimics to changes in solvent polarity and find that the most responsive, a mimic of 3FY, has a 2.9-fold greater change in chemical shift compared to the other amino acid mimics in aprotic solvents including the 2FY mimic. We also probed the utility of 2FY for F NMR by measuring its NMR relaxation properties in solution and the chemical shift anisotropy (CSA) of a polycrystalline sample of the amino acid by magic angle spinning. Using protein-observed fluorine NMR (PrOF NMR), we compared the influence of 2FY and 3FY incorporation on stability and pK perturbation when incorporated into the KIX domain of CBP/p300. Lastly, we investigated the F NMR response of both 2FY and 3FY-labeled proteins to a protein-protein interaction partner, MLL, and discovered that 2FY can report on allosteric interactions that are not observed with 3FY-labeling in this protein complex. The reduced perturbation to pK and similar but reduced CSA of 2FY to 3FY supports 2FY as a suitable alternative amino acid for incorporation into large proteins for F NMR analysis.
将 F 掺入蛋白质中,可以通过 NMR 研究它们的分子相互作用。研究 F 标记的芳香族氨基酸主要集中在 4-、5-或 6-氟色氨酸、4-氟苯丙氨酸(4、5 或 6FW)或 3-氟酪氨酸(3FY)上,而 2-氟酪氨酸(2FY)则在很大程度上研究不足。在这里,我们报告了与不同氟代氨基酸的比较分析。我们首先报告了五种芳香族氨基酸类似物对溶剂极性变化的 NMR 化学位移响应,发现最敏感的类似物 3FY 的化学位移变化比其他氨基酸类似物在包括 2FY 类似物在内的非质子溶剂中大 2.9 倍。我们还通过测量溶液中 2FY 的 NMR 弛豫性质和通过魔角旋转测量氨基酸的多晶样品的化学位移各向异性(CSA)来探测 2FY 用于 F NMR 的实用性。使用蛋白质观察氟 NMR(PrOF NMR),我们比较了 2FY 和 3FY 掺入对 CBP/p300 的 KIX 结构域中掺入时稳定性和 pK 扰动的影响。最后,我们研究了 2FY 和 3FY 标记蛋白对蛋白-蛋白相互作用伙伴 MLL 的 F NMR 响应,发现 2FY 可以报告在该蛋白复合物中 3FY 标记未观察到的变构相互作用。对 pK 的较小干扰以及 2FY 与 3FY 的 CSA 相似但较小,支持 2FY 作为适用于掺入 F NMR 分析的大蛋白的替代氨基酸。