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Emerging and Re-Emerging Warheads for Targeted Covalent Inhibitors: Applications in Medicinal Chemistry and Chemical Biology.新兴与重现的靶向共价抑制剂弹头:在药物化学和化学生物学中的应用。
J Med Chem. 2019 Jun 27;62(12):5673-5724. doi: 10.1021/acs.jmedchem.8b01153. Epub 2019 Jan 25.
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EPR-Derived Structure of a Paramagnetic Intermediate Generated by Biotin Synthase BioB.EPR 谱学揭示生物素合酶 BioB 生成的顺磁中间物的结构
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Parametrization of Substituents: Effects of Fluorine and Other Heteroatoms on OH, NH, and CH Acidities.取代基的参数化:氟和其他杂原子对OH、NH和CH酸度的影响。
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Observation of Radical Rebound in a Mononuclear Nonheme Iron Model Complex.单核非血红素铁模型配合物中自由基反弹的观察。
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Destruction and reformation of an iron-sulfur cluster during catalysis by lipoyl synthase.硫辛酰胺合成酶催化过程中铁硫簇的破坏与重塑
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How do Enzymes Utilize Reactive OH Radicals? Lessons from Nonheme HppE and Fenton Systems.酶如何利用反应性 OH 自由基?非血红素 HppE 和 Fenton 体系的启示。
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Spectroscopic Evidence for the Two C-H-Cleaving Intermediates of Aspergillus nidulans Isopenicillin N Synthase.曲霉属 nidulans 异青霉素 N 合酶的两种 C-H-C 裂解中间体的光谱证据。
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Mechanism of the C5 stereoinversion reaction in the biosynthesis of carbapenem antibiotics.碳青霉烯类抗生素生物合成中 C5 立体反转反应的机制。
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9
Evidence that the fosfomycin-producing epoxidase, HppE, is a non-heme-iron peroxidase.证据表明,磷霉素产生的环氧化物酶 HppE 是非血红素铁过氧化物酶。
Science. 2013 Nov 22;342(6161):991-5. doi: 10.1126/science.1240373. Epub 2013 Oct 10.
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Elucidation of the Fe(IV)=O intermediate in the catalytic cycle of the halogenase SyrB2.阐明卤代酶 SyrB2 催化循环中的 Fe(IV)=O 中间物。
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立体位阻强制 -环氧化物形成在自由基 C-O 偶联反应中,()-2-羟丙基膦酸酯环氧化酶 (HppE) 产生膦霉素。

Steric Enforcement of -Epoxide Formation in the Radical C-O-Coupling Reaction by Which ()-2-Hydroxypropylphosphonate Epoxidase (HppE) Produces Fosfomycin.

机构信息

Department of Chemistry and Department of Biochemistry & Molecular Biology , The Pennsylvania State University , University Park , Pennsylvania 16802 , United States.

出版信息

J Am Chem Soc. 2019 Dec 26;141(51):20397-20406. doi: 10.1021/jacs.9b10974. Epub 2019 Dec 11.

DOI:10.1021/jacs.9b10974
PMID:31769979
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6933072/
Abstract

()-2-Hydroxypropylphosphonate [()-2-HPP, ] epoxidase (HppE) reduces HO at its nonheme-iron cofactor to install the oxirane "warhead" of the antibiotic fosfomycin. The net replacement of the C1 hydrogen of by its C2 oxygen, with inversion of configuration at C1, yields the -epoxide of the drug [(1,2)-epoxypropylphosphonic acid (-Fos, )]. Here we show that HppE achieves ∼95% selectivity for C1 inversion and -epoxide formation via steric guidance of a radical-coupling mechanism. Published structures of the HppE·Fe· and HppE·Zn· complexes reveal distinct pockets for C3 of the substrate and product and identify four hydrophobic residues-Leu120, Leu144, Phe182, and Leu193-close to C3 in one of the complexes. Replacement of Leu193 in the substrate C3 pocket with the bulkier Phe enhances stereoselectivity (cis:trans ∼99:1), whereas the Leu120Phe substitution in the product C3 pocket diminishes it (∼82:18). of C1 configuration and -epoxide formation become predominant with the bulk-reducing Phe182Ala substitution in the substrate C3 pocket (∼13:87), trifluorination of C3 (∼23:77), or both (∼1:99). The effect of C3 trifluorination is counteracted by the more constrained substrate C3 pockets in the Leu193Phe (∼56:44) and Leu144Phe/Leu193Phe (∼90:10) variants. The ability of HppE to epoxidize substrate analogues bearing halogens at C3, C1, or both is inconsistent with a published hypothesis of polar cyclization via a C1 carbocation. Rather, specific enzyme-substrate contacts drive inversion of the C1 radical-as proposed in a recent computational study-to direct formation of the more potently antibacterial -epoxide by radicaloid C-O coupling.

摘要

-2-羟丙基膦酸酯[(-2-HPP,)]环氧化酶(HppE)将 HO 在其非血红素铁辅因子还原为抗生素磷霉素的环氧“弹头”。C1 氢被其 C2 氧的净取代,同时 C1 构型反转,生成药物的 -环氧[(1,2)-环氧丙基膦酸(-Fos,)]。在这里,我们通过自由基偶联机制的空间导向表明,HppE 对 C1 反转和 -环氧形成的选择性约为 95%。发表的 HppE·Fe·和 HppE·Zn·复合物结构揭示了底物和产物 C3 的不同口袋,并确定了四个疏水性残基-Leu120、Leu144、Phe182 和 Leu193-在一个复合物中接近 C3。用较大的苯丙氨酸替代底物 C3 口袋中的 Leu193 会增强立体选择性(顺式:反式≈99:1),而产物 C3 口袋中的 Leu120Phe 取代会降低立体选择性(约 82:18)。用 C3 位体积减小的苯丙氨酸取代底物 C3 口袋中的 Leu182Ala 时,C1 构型的 和 -环氧形成成为主要产物(约 13:87),C3 三氟化(约 23:77)或两者兼而有之(约 1:99)。C3 三氟化的影响被 Leu193Phe(约 56:44)和 Leu144Phe/Leu193Phe(约 90:10)变体中更受限制的底物 C3 口袋所抵消。HppE 对 C3、C1 或两者都带有卤素的底物类似物进行环氧化的能力与通过 C1 碳阳离子进行极性环化的发表假说不一致。相反,特定的酶-底物接触驱动 C1 自由基的反转-正如最近的计算研究提出的-直接通过自由基 C-O 偶联形成更具抗菌活性的 -环氧。